Conformers:
ABBIImiBZICOPNSYNN
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2.9 A crystal structure of Streptomycin RNA-aptamer
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nta_A_G1_G2 | AAA | AA04 | 94 | 0.19 |
| 02 | 1nta_A_G2_A3 | AAA | AA00 | 63 | 0.26 |
| 03 | 1nta_A_A3_U4 | AAA | AA04 | 68 | 0.22 |
| 04 | 1nta_A_U4_C5 | AAA | AA00 | 73 | 0.13 |
| 05 | 1nta_A_C5_G6 | NAN | NANT | 0 | 0.27 |
| 06 | 1nta_A_G6_C7 | NAN | NANT | 0 | 0.99 |
| 07 | 1nta_A_C7_A8 | NAN | NANT | 0 | 1.49 |
| 08 | 1nta_A_A8_U9 | NAN | NANT | 0 | 1.49 |
| 09 | 1nta_A_U9_U10 | NAN | NANT | 0 | 0.77 |
| 10 | 1nta_A_U10_U11 | OPN | OP22 | 41 | 0.39 |
| 11 | 1nta_A_U11_G12 | NAN | NANT | 0 | 0.72 |
| 12 | 1nta_A_G12_G13 | NAN | NANT | 0 | 1.35 |
| 13 | 1nta_A_G13_A14 | AAA | AA03 | 26 | 0.30 |
| 14 | 1nta_A_A14_C15 | AAA | AA03 | 59 | 0.37 |
| 15 | 1nta_A_C15_U16 | NAN | NANT | 0 | 0.61 |
| 16 | 1nta_A_U16_U17 | NAN | NANT | 0 | 0.74 |
| 17 | 1nta_A_U17_C18 | NAN | NANT | 0 | 0.95 |
| 18 | 1nta_A_C18_U19 | NAN | NANT | 0 | 0.83 |
| 19 | 1nta_A_U19_G20 | NAN | NANT | 0 | 0.52 |
| 20 | 1nta_A_G20_C21 | AAA | AA00 | 23 | 0.22 |
| 21 | 1nta_A_C21_C22 | AAA | AA08 | 65 | 0.20 |
| 22 | 1nta_B_C101_G102 | AAA | AA08 | 58 | 0.27 |
| 23 | 1nta_B_G102_G103 | AAA | AA08 | 81 | 0.20 |
| 24 | 1nta_B_G103_C104 | AAA | AA00 | 80 | 0.16 |
| 25 | 1nta_B_C104_A105 | AAA | AA08 | 71 | 0.30 |
| 26 | 1nta_B_A105_C106 | NAN | NANT | 0 | 0.63 |
| 27 | 1nta_B_C106_C107 | NAN | NANT | 0 | 1.28 |
| 28 | 1nta_B_C107_A108 | NAN | NANT | 0 | 1.46 |
| 29 | 1nta_B_A108_C109 | NAN | NANT | 0 | 0.52 |
| 30 | 1nta_B_C109_G110 | NAN | NANT | 0 | 0.42 |
| 31 | 1nta_B_G110_G111 | AAA | AA04 | 53 | 0.44 |
| 32 | 1nta_B_G111_U112 | AAA | AA00 | 52 | 0.18 |
| 33 | 1nta_B_U112_C113 | AAA | AA00 | 71 | 0.21 |
| 34 | 1nta_B_C113_G114 | AAA | AA04 | 70 | 0.38 |
| 35 | 1nta_B_G114_G115 | AAA | AA00 | 17 | 0.36 |
| 36 | 1nta_B_G115_A116 | AAA | AA00 | 86 | 0.15 |
| 37 | 1nta_B_A116_U117 | AAA | AA00 | 27 | 0.20 |
| 38 | 1nta_B_U117_C118 | AAA | AA00 | 61 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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