Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure Complex between the Lactococcus lactis Fpg and an abasic site containing DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nnj_D_DC1_DT2 | BBB | BB00 | 31 | 0.36 |
| 02 | 1nnj_D_DT2_DC3 | BBB | BB00 | 95 | 0.13 |
| 03 | 1nnj_D_DC3_DT4 | BBB | BB00 | 93 | 0.18 |
| 04 | 1nnj_D_DT4_DT5 | BBB | BB00 | 54 | 0.27 |
| 05 | 1nnj_D_DT5_DT6 | BBB | BB01 | 40 | 0.37 |
| 06 | 1nnj_D_DT8_DT9 | BBB | BB01 | 86 | 0.23 |
| 07 | 1nnj_D_DT9_DT10 | BBB | BB00 | 86 | 0.18 |
| 08 | 1nnj_D_DT10_DC11 | B12 | BB04 | 74 | 0.15 |
| 09 | 1nnj_D_DC11_DT12 | BBB | BB00 | 66 | 0.32 |
| 10 | 1nnj_D_DT12_DC13 | BBw | BB03 | 40 | 0.17 |
| 11 | 1nnj_D_DC13_DG14 | BBB | BB00 | 33 | 0.53 |
| 12 | 1nnj_E_DG15_DC16 | BBw | BB02 | 20 | 0.47 |
| 13 | 1nnj_E_DC16_DG17 | BBB | BB00 | 83 | 0.37 |
| 14 | 1nnj_E_DG17_DA18 | BBB | BB00 | 93 | 0.15 |
| 15 | 1nnj_E_DA18_DG19 | BBB | BB00 | 82 | 0.18 |
| 16 | 1nnj_E_DG19_DA20 | BBB | BB00 | 77 | 0.21 |
| 17 | 1nnj_E_DA20_DA21 | B12 | BB04 | 78 | 0.17 |
| 18 | 1nnj_E_DA21_DA22 | BBB | BB00 | 16 | 0.40 |
| 19 | 1nnj_E_DA22_DC23 | BBB | BB00 | 20 | 0.61 |
| 20 | 1nnj_E_DC23_DA24 | BBB | BB00 | 45 | 0.39 |
| 21 | 1nnj_E_DA24_DA25 | BBB | BB00 | 83 | 0.21 |
| 22 | 1nnj_E_DA25_DA26 | BBB | BB00 | 78 | 0.20 |
| 23 | 1nnj_E_DA26_DG27 | BBB | BB00 | 73 | 0.25 |
| 24 | 1nnj_E_DG27_DA28 | BBB | BB00 | 68 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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