Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of the MutS-ADPBeF3-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 43 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nne_C_DG1901_DC1902 | NAN | NANT | 0 | 0.61 |
| 02 | 1nne_C_DC1902_DG1903 | BBw | BB11 | 68 | 0.56 |
| 03 | 1nne_C_DG1903_DA1904 | BBw | BB02 | 66 | 0.35 |
| 04 | 1nne_C_DA1904_DC1905 | NAN | NANT | 0 | 0.42 |
| 05 | 1nne_C_DC1905_DG1906 | BBw | BB02 | 52 | 0.48 |
| 06 | 1nne_C_DG1906_DC1907 | BBB | BB00 | 63 | 0.22 |
| 07 | 1nne_C_DC1907_DT1908 | BBB | BB00 | 61 | 0.29 |
| 08 | 1nne_C_DT1908_DA1909 | BB2 | BB07 | 56 | 0.35 |
| 09 | 1nne_C_DA1909_DG1910 | BBw | BB02 | 44 | 0.32 |
| 10 | 1nne_C_DG1910_DC1911 | B12 | BB04 | 66 | 0.18 |
| 11 | 1nne_C_DC1911_DG1912 | NAN | NANT | 0 | 0.55 |
| 12 | 1nne_C_DG1912_DT1913 | NAN | NANT | 0 | 1.27 |
| 13 | 1nne_C_DT1913_DG1914 | NAN | NANT | 0 | 1.02 |
| 14 | 1nne_C_DG1914_DC1915 | BBB | BB00 | 87 | 0.16 |
| 15 | 1nne_C_DC1915_DG1916 | NAN | NANT | 0 | 0.63 |
| 16 | 1nne_C_DG1916_DG1917 | BBw | BB02 | 48 | 0.52 |
| 17 | 1nne_C_DG1917_DC1918 | BBB | BB00 | 50 | 0.36 |
| 18 | 1nne_C_DC1918_DT1919 | BBw | BB02 | 87 | 0.17 |
| 19 | 1nne_C_DT1919_DC1920 | BBB | BB00 | 71 | 0.21 |
| 20 | 1nne_C_DC1920_DG1921 | B12 | BB04 | 69 | 0.25 |
| 21 | 1nne_C_DG1921_DT1922 | BBB | BB00 | 41 | 0.34 |
| 22 | 1nne_C_DT1922_DC1923 | NAN | NANT | 0 | 0.64 |
| 23 | 1nne_D_DG1951_DG1952 | NAN | NANT | 0 | 1.07 |
| 24 | 1nne_D_DG1952_DA1953 | BBB | BB00 | 63 | 0.23 |
| 25 | 1nne_D_DA1953_DC1954 | BBB | BB00 | 72 | 0.29 |
| 26 | 1nne_D_DC1954_DG1955 | miB | BB12 | 12 | 0.59 |
| 27 | 1nne_D_DG1955_DA1956 | BBB | BB00 | 15 | 0.60 |
| 28 | 1nne_D_DA1956_DG1957 | BBB | BB00 | 73 | 0.22 |
| 29 | 1nne_D_DG1957_DC1958 | B12 | BB04 | 54 | 0.34 |
| 30 | 1nne_D_DC1958_DC1959 | BBB | BB00 | 61 | 0.37 |
| 31 | 1nne_D_DC1959_DG1960 | BBw | BB02 | 13 | 0.42 |
| 32 | 1nne_D_DG1960_DC1961 | B12 | BB04 | 58 | 0.29 |
| 33 | 1nne_D_DC1961_DC1962 | NAN | NANT | 0 | 0.32 |
| 34 | 1nne_D_DC1962_DG1963 | BBw | BB02 | 78 | 0.20 |
| 35 | 1nne_D_DG1963_DC1964 | BBB | BB00 | 75 | 0.25 |
| 36 | 1nne_D_DC1964_DT1965 | BBw | BB02 | 79 | 0.21 |
| 37 | 1nne_D_DT1965_DA1966 | BBB | BB00 | 55 | 0.40 |
| 38 | 1nne_D_DA1966_DG1967 | BBB | BB00 | 82 | 0.23 |
| 39 | 1nne_D_DG1967_DC1968 | BBw | BB02 | 49 | 0.33 |
| 40 | 1nne_D_DC1968_DG1969 | NAN | NANT | 0 | 0.41 |
| 41 | 1nne_D_DG1969_DT1970 | NAN | NANT | 0 | 0.84 |
| 42 | 1nne_D_DT1970_DC1971 | BB2 | BB08 | 59 | 0.40 |
| 43 | 1nne_D_DC1971_DG1972 | NAN | NANT | 0 | 1.15 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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