Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Mad-Max recognizing DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nlw_F_DG102_DA103 | BBB | BB00 | 49 | 0.41 |
| 02 | 1nlw_F_DA103_DG104 | BBB | BB00 | 91 | 0.15 |
| 03 | 1nlw_F_DG104_DT105 | miB | BB13 | 50 | 0.27 |
| 04 | 1nlw_F_DT105_DA106 | B12 | BB04 | 48 | 0.42 |
| 05 | 1nlw_F_DA106_DG107 | BBB | BB00 | 86 | 0.18 |
| 06 | 1nlw_F_DG107_DC108 | BBB | BB01 | 92 | 0.15 |
| 07 | 1nlw_F_DC108_DA109 | BBB | BB00 | 45 | 0.35 |
| 08 | 1nlw_F_DA109_DC110 | BBw | BB02 | 34 | 0.33 |
| 09 | 1nlw_F_DC110_DG111 | BBB | BB00 | 80 | 0.38 |
| 10 | 1nlw_F_DG111_DT112 | BBw | BB02 | 86 | 0.14 |
| 11 | 1nlw_F_DT112_DG113 | BBB | BB00 | 83 | 0.21 |
| 12 | 1nlw_F_DG113_DC114 | BBw | BB02 | 91 | 0.19 |
| 13 | 1nlw_F_DC114_DT115 | BBB | BB00 | 91 | 0.14 |
| 14 | 1nlw_F_DT115_DA116 | BBB | BB00 | 97 | 0.09 |
| 15 | 1nlw_F_DA116_DC117 | BBw | BB02 | 91 | 0.19 |
| 16 | 1nlw_F_DC117_DT118 | BBB | BB00 | 82 | 0.24 |
| 17 | 1nlw_F_DT118_DC119 | BBB | BB00 | 79 | 0.32 |
| 18 | 1nlw_G_DG302_DA303 | BBB | BB00 | 95 | 0.15 |
| 19 | 1nlw_G_DA303_DG304 | BBB | BB00 | 93 | 0.23 |
| 20 | 1nlw_G_DG304_DT305 | BBB | BB00 | 89 | 0.19 |
| 21 | 1nlw_G_DT305_DA306 | BBB | BB00 | 93 | 0.20 |
| 22 | 1nlw_G_DA306_DG307 | BBB | BB00 | 89 | 0.14 |
| 23 | 1nlw_G_DG307_DC308 | BBw | BB02 | 82 | 0.28 |
| 24 | 1nlw_G_DC308_DA309 | BBB | BB00 | 74 | 0.34 |
| 25 | 1nlw_G_DA309_DC310 | B12 | BB04 | 63 | 0.15 |
| 26 | 1nlw_G_DC310_DG311 | BBB | BB00 | 77 | 0.28 |
| 27 | 1nlw_G_DG311_DT312 | BBB | BB00 | 53 | 0.27 |
| 28 | 1nlw_G_DT312_DG313 | BBB | BB00 | 58 | 0.34 |
| 29 | 1nlw_G_DG313_DC314 | B12 | BB05 | 56 | 0.38 |
| 30 | 1nlw_G_DC314_DT315 | BBB | BB00 | 20 | 0.32 |
| 31 | 1nlw_G_DT315_DA316 | BBB | BB00 | 90 | 0.24 |
| 32 | 1nlw_G_DA316_DC317 | miB | BB12 | 75 | 0.41 |
| 33 | 1nlw_G_DC317_DT318 | BBw | BB16 | 90 | 0.28 |
| 34 | 1nlw_G_DT318_DC319 | BBB | BB00 | 95 | 0.13 |
| 35 | 1nlw_H_DG602_DA603 | BBw | BB11 | 83 | 0.22 |
| 36 | 1nlw_H_DA603_DG604 | BBB | BB00 | 41 | 0.47 |
| 37 | 1nlw_H_DG604_DT605 | BBB | BB00 | 79 | 0.32 |
| 38 | 1nlw_H_DT605_DA606 | BBB | BB00 | 92 | 0.13 |
| 39 | 1nlw_H_DA606_DG607 | BBB | BB00 | 88 | 0.18 |
| 40 | 1nlw_H_DG607_DC608 | BBB | BB00 | 83 | 0.19 |
| 41 | 1nlw_H_DC608_DA609 | B12 | BB04 | 72 | 0.21 |
| 42 | 1nlw_H_DA609_DC610 | BBB | BB00 | 77 | 0.21 |
| 43 | 1nlw_H_DC610_DG611 | BBB | BB00 | 65 | 0.35 |
| 44 | 1nlw_H_DG611_DT612 | BBw | BB02 | 70 | 0.20 |
| 45 | 1nlw_H_DT612_DG613 | BBB | BB00 | 90 | 0.26 |
| 46 | 1nlw_H_DG613_DC614 | BBB | BB00 | 95 | 0.16 |
| 47 | 1nlw_H_DC614_DT615 | BBw | BB02 | 93 | 0.17 |
| 48 | 1nlw_H_DT615_DA616 | BBB | BB00 | 77 | 0.29 |
| 49 | 1nlw_H_DA616_DC617 | BBB | BB00 | 80 | 0.22 |
| 50 | 1nlw_H_DC617_DT618 | BBB | BB00 | 79 | 0.31 |
| 51 | 1nlw_H_DT618_DC619 | NAN | NANT | 0 | 0.27 |
| 52 | 1nlw_J_DG802_DA803 | BBw | BB03 | 96 | 0.16 |
| 53 | 1nlw_J_DA803_DG804 | BBB | BB00 | 73 | 0.31 |
| 54 | 1nlw_J_DG804_DT805 | BBB | BB00 | 90 | 0.16 |
| 55 | 1nlw_J_DT805_DA806 | BBB | BB00 | 86 | 0.26 |
| 56 | 1nlw_J_DA806_DG807 | BBB | BB00 | 90 | 0.18 |
| 57 | 1nlw_J_DG807_DC808 | BBw | BB02 | 79 | 0.26 |
| 58 | 1nlw_J_DC808_DA809 | BBB | BB00 | 78 | 0.34 |
| 59 | 1nlw_J_DA809_DC810 | B12 | BB04 | 58 | 0.21 |
| 60 | 1nlw_J_DC810_DG811 | BBB | BB00 | 81 | 0.21 |
| 61 | 1nlw_J_DG811_DT812 | BBw | BB02 | 69 | 0.20 |
| 62 | 1nlw_J_DT812_DG813 | BBB | BB00 | 87 | 0.33 |
| 63 | 1nlw_J_DG813_DC814 | B12 | BB04 | 68 | 0.28 |
| 64 | 1nlw_J_DC814_DT815 | BBB | BB00 | 81 | 0.27 |
| 65 | 1nlw_J_DT815_DA816 | BBB | BB00 | 90 | 0.17 |
| 66 | 1nlw_J_DA816_DC817 | BBB | BB00 | 88 | 0.21 |
| 67 | 1nlw_J_DC817_DT818 | BBB | BB00 | 91 | 0.21 |
| 68 | 1nlw_J_DT818_DC819 | BBB | BB00 | 73 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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