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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Myc-Max recognizing DNA

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011nkp_F_DC101_DG102BBwBB16150.58 BB16
021nkp_F_DG102_DA103BB2BB07580.26 BB07
031nkp_F_DA103_DG104BBBBB00870.28 BB00
041nkp_F_DG104_DT105BBBBB00960.13 BB00
051nkp_F_DT105_DA106BBBBB00710.27 BB00
061nkp_F_DA106_DG107BBBBB00700.38 BB00
071nkp_F_DG107_DC108B12BB04650.23 BB04
081nkp_F_DC108_DA109BBBBB00750.33 BB00
091nkp_F_DA109_DC110BBBBB01860.16 BB01
101nkp_F_DC110_DG111BBBBB00570.27 BB00
111nkp_F_DG111_DT112BBBBB00610.25 BB00
121nkp_F_DT112_DG113BBBBB00530.35 BB00
131nkp_F_DG113_DC114NANNANT00.35 BA08
141nkp_F_DC114_DT115BBBBB00460.41 BB00
151nkp_F_DT115_DA116BBBBB00950.17 BB00
161nkp_F_DA116_DC117BBBBB00740.22 BB00
171nkp_F_DC117_DT118BBBBB00780.24 BB00
181nkp_F_DT118_DC119B-ABA01140.15 BA01
191nkp_G_DC301_DG302NANNANT01.06 OP21
201nkp_G_DG302_DA303BBBBB00870.18 BB00
211nkp_G_DA303_DG304BBBBB00920.15 BB00
221nkp_G_DG304_DT305BBBBB00940.17 BB00
231nkp_G_DT305_DA306BB2BB07890.24 BB07
241nkp_G_DA306_DG307BBBBB01890.19 BB01
251nkp_G_DG307_DC308BBBBB01830.17 BB01
261nkp_G_DC308_DA309BBBBB00560.30 BB00
271nkp_G_DA309_DC310B-ABA08590.28 BA08
281nkp_G_DC310_DG311BBBBB00290.28 BB00
291nkp_G_DG311_DT312BBBBB01760.26 BB01
301nkp_G_DT312_DG313BBBBB00650.26 BB00
311nkp_G_DG313_DC314BBBBB00880.24 BB00
321nkp_G_DC314_DT315BBBBB00910.20 BB00
331nkp_G_DT315_DA316BB2BB07920.20 BB07
341nkp_G_DA316_DC317BBBBB00910.15 BB00
351nkp_G_DC317_DT318BBBBB00830.25 BB00
361nkp_G_DT318_DC319BBBBB00670.33 BB00
371nkp_H_DC601_DG602NANNANT00.97 OP13
381nkp_H_DG602_DA603BBBBB00820.21 BB00
391nkp_H_DA603_DG604BBBBB00940.16 BB00
401nkp_H_DG604_DT605BBBBB00880.15 BB00
411nkp_H_DT605_DA606BB2BB07690.26 BB07
421nkp_H_DA606_DG607BBBBB01860.17 BB01
431nkp_H_DG607_DC608BBBBB01850.18 BB01
441nkp_H_DC608_DA609BBBBB00580.31 BB00
451nkp_H_DA609_DC610BBBBB00220.33 BB00
461nkp_H_DC610_DG611BBBBB00450.26 BB00
471nkp_H_DG611_DT612BBBBB01810.19 BB01
481nkp_H_DT612_DG613BBBBB00650.28 BB00
491nkp_H_DG613_DC614BBBBB00940.18 BB00
501nkp_H_DC614_DT615BBBBB00780.23 BB00
511nkp_H_DT615_DA616B12BB04930.14 BB04
521nkp_H_DA616_DC617BBBBB00960.11 BB00
531nkp_H_DC617_DT618BBBBB00930.20 BB00
541nkp_H_DT618_DC619BBBBB00730.26 BB00
551nkp_J_DC801_DG802BBwBB16210.61 BB16
561nkp_J_DG802_DA803BB2BB07810.20 BB07
571nkp_J_DA803_DG804B12BB04920.14 BB04
581nkp_J_DG804_DT805BBBBB00920.16 BB00
591nkp_J_DT805_DA806BBBBB00910.17 BB00
601nkp_J_DA806_DG807BBBBB00850.17 BB00
611nkp_J_DG807_DC808BBBBB00670.29 BB00
621nkp_J_DC808_DA809BBBBB00750.28 BB00
631nkp_J_DA809_DC810BBBBB00320.26 BB00
641nkp_J_DC810_DG811BBBBB00520.29 BB00
651nkp_J_DG811_DT812BBBBB00410.29 BB00
661nkp_J_DT812_DG813BBBBB00580.31 BB00
671nkp_J_DG813_DC814BBwBB02800.26 BB02
681nkp_J_DC814_DT815BBBBB00870.22 BB00
691nkp_J_DT815_DA816BBBBB00930.14 BB00
701nkp_J_DA816_DC817BBBBB00640.22 BB00
711nkp_J_DC817_DT818BBBBB00780.22 BB00
721nkp_J_DT818_DC819BBBBB00920.14 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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