Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nk3_A_DT1_DG2 | NAN | NANT | 0 | 0.80 |
| 02 | 1nk3_A_DG2_DT3 | NAN | NANT | 0 | 0.47 |
| 03 | 1nk3_A_DT3_DG4 | NAN | NANT | 0 | 0.59 |
| 04 | 1nk3_A_DG4_DT5 | BBB | BB01 | 78 | 0.24 |
| 05 | 1nk3_A_DT5_DC6 | B-A | BA05 | 34 | 0.46 |
| 06 | 1nk3_A_DC6_DA7 | NAN | NANT | 0 | 0.52 |
| 07 | 1nk3_A_DA7_DA8 | BBw | BB02 | 71 | 0.36 |
| 08 | 1nk3_A_DA8_DG9 | B-A | BA05 | 33 | 0.41 |
| 09 | 1nk3_A_DG9_DT10 | BBB | BB01 | 53 | 0.21 |
| 10 | 1nk3_A_DT10_DG11 | BBB | BB00 | 10 | 0.34 |
| 11 | 1nk3_A_DG11_DG12 | BBB | BB00 | 56 | 0.42 |
| 12 | 1nk3_A_DG12_DC13 | NAN | NANT | 0 | 0.58 |
| 13 | 1nk3_A_DC13_DT14 | NAN | NANT | 0 | 0.46 |
| 14 | 1nk3_A_DT14_DG15 | NAN | NANT | 0 | 0.57 |
| 15 | 1nk3_A_DG15_DT16 | NAN | NANT | 0 | 0.67 |
| 16 | 1nk3_B_DA17_DC18 | NAN | NANT | 0 | 0.79 |
| 17 | 1nk3_B_DC18_DA19 | BBB | BB01 | 20 | 0.29 |
| 18 | 1nk3_B_DA19_DG20 | BBB | BB00 | 69 | 0.31 |
| 19 | 1nk3_B_DG20_DC21 | BB2 | BB07 | 34 | 0.55 |
| 20 | 1nk3_B_DC21_DC22 | NAN | NANT | 0 | 0.68 |
| 21 | 1nk3_B_DC22_DA23 | B12 | BB04 | 33 | 0.30 |
| 22 | 1nk3_B_DA23_DC24 | B12 | BB04 | 30 | 0.38 |
| 23 | 1nk3_B_DC24_DT25 | BBw | BB02 | 31 | 0.25 |
| 24 | 1nk3_B_DT25_DT26 | NAN | NANT | 0 | 0.68 |
| 25 | 1nk3_B_DT26_DG27 | BBB | BB00 | 47 | 0.50 |
| 26 | 1nk3_B_DG27_DA28 | NAN | NANT | 0 | 0.40 |
| 27 | 1nk3_B_DA28_DC29 | BBB | BB00 | 33 | 0.33 |
| 28 | 1nk3_B_DC29_DA30 | NAN | NANT | 0 | 0.59 |
| 29 | 1nk3_B_DA30_DC31 | B-A | BA05 | 19 | 0.34 |
| 30 | 1nk3_B_DC31_DA32 | NAN | NANT | 0 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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