Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1njz_B_DG20_DC21 | BBB | BB00 | 29 | 0.42 |
| 02 | 1njz_B_DC21_DG22 | B-A | BA08 | 80 | 0.27 |
| 03 | 1njz_B_DG22_DA23 | A-B | AB02 | 62 | 0.34 |
| 04 | 1njz_B_DA23_DT24 | B-A | BA01 | 88 | 0.11 |
| 05 | 1njz_B_DT24_DC25 | AAA | AA00 | 26 | 0.45 |
| 06 | 1njz_B_DC25_DA26 | A-B | AB01 | 81 | 0.28 |
| 07 | 1njz_B_DA26_DG27 | B-A | BA08 | 70 | 0.30 |
| 08 | 1njz_B_DG27_DC28 | A-B | AB01 | 57 | 0.33 |
| 09 | 1njz_B_DC28_DC29 | BBB | BB00 | 87 | 0.19 |
| 10 | 1njz_C_DT6_DG7 | AAA | AA00 | 92 | 0.16 |
| 11 | 1njz_C_DG7_DC8 | AAw | AA01 | 94 | 0.18 |
| 12 | 1njz_C_DC8_DT9 | A-B | AB05 | 63 | 0.30 |
| 13 | 1njz_C_DT9_DG10 | BBB | BB00 | 91 | 0.15 |
| 14 | 1njz_C_DG10_DA11 | B-A | BA08 | 96 | 0.15 |
| 15 | 1njz_C_DA11_DT12 | A-B | AB01 | 87 | 0.25 |
| 16 | 1njz_C_DT12_DC13 | B-A | BA01 | 81 | 0.21 |
| 17 | 1njz_C_DC13_DG14 | AAA | AA00 | 20 | 0.38 |
| 18 | 1njz_C_DG14_DC15 | AAA | AA00 | 17 | 0.39 |
| 19 | 1njz_C_DC15_DA16 | AAA | AA00 | 57 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|