Conformers:
ABBIImiBZICOPNSYNN
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THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1njy_B_DG19_DC20 | BBw | BB02 | 62 | 0.24 |
| 02 | 1njy_B_DC20_DG21 | BBB | BB00 | 89 | 0.20 |
| 03 | 1njy_B_DG21_DA22 | B12 | BB04 | 89 | 0.17 |
| 04 | 1njy_B_DA22_DT23 | BBw | BB02 | 89 | 0.12 |
| 05 | 1njy_B_DT23_DC24 | B-A | BA05 | 53 | 0.29 |
| 06 | 1njy_B_DC24_DA25 | AAA | AA00 | 16 | 0.45 |
| 07 | 1njy_B_DA25_DC26 | A-B | AB01 | 81 | 0.36 |
| 08 | 1njy_B_DC26_DG27 | B-A | BA08 | 83 | 0.25 |
| 09 | 1njy_B_DG27_DT28 | AAA | AA00 | 77 | 0.24 |
| 10 | 1njy_B_DT28_DT29 | A-B | AB01 | 84 | 0.25 |
| 11 | 1njy_C_DG3_DT4 | NAN | NANT | 0 | 0.93 |
| 12 | 1njy_C_DT4_DA5 | AAA | AA00 | 63 | 0.38 |
| 13 | 1njy_C_DA5_DC6 | AAw | AA01 | 92 | 0.19 |
| 14 | 1njy_C_DC6_DG7 | A-B | AB04 | 81 | 0.17 |
| 15 | 1njy_C_DG7_DT8 | BBB | BB00 | 93 | 0.19 |
| 16 | 1njy_C_DT8_DG9 | BBB | BB00 | 94 | 0.18 |
| 17 | 1njy_C_DG9_DA10 | BBB | BB00 | 82 | 0.32 |
| 18 | 1njy_C_DA10_DT11 | BBB | BB00 | 96 | 0.16 |
| 19 | 1njy_C_DT11_DC12 | BBB | BB00 | 95 | 0.11 |
| 20 | 1njy_C_DC12_DG13 | B12 | BB04 | 83 | 0.24 |
| 21 | 1njy_C_DG13_DC14 | BBw | BB02 | 64 | 0.18 |
| 22 | 1njy_C_DC14_DA15 | miB | BB13 | 80 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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