Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a yeast TFIIA/TBP/DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nh2_E_DT1_DG2 | NAN | NANT | 0 | 0.52 |
| 02 | 1nh2_E_DG2_DT3 | NAN | NANT | 0 | 0.49 |
| 03 | 1nh2_E_DT3_DA4 | AAA | AA02 | 31 | 0.54 |
| 04 | 1nh2_E_DA4_5IU5 | NAN | NANT | 0 | 0.35 |
| 05 | 1nh2_E_5IU5_DG6 | AAA | AA04 | 18 | 0.39 |
| 06 | 1nh2_E_DG6_DT7 | AAA | AA00 | 11 | 0.33 |
| 07 | 1nh2_E_DT7_DA8 | AAA | AA00 | 20 | 0.35 |
| 08 | 1nh2_E_DA8_DT9 | AAA | AA00 | 27 | 0.27 |
| 09 | 1nh2_E_DT9_DA10 | AAA | AA00 | 12 | 0.49 |
| 10 | 1nh2_E_DA10_5IU11 | NAN | NANT | 0 | 0.64 |
| 11 | 1nh2_E_5IU11_DA12 | AAA | AA02 | 53 | 0.20 |
| 12 | 1nh2_E_DA12_DA13 | AAA | AA02 | 66 | 0.24 |
| 13 | 1nh2_E_DA13_DA14 | AAA | AA02 | 74 | 0.24 |
| 14 | 1nh2_E_DA14_DA15 | AAA | AA02 | 83 | 0.12 |
| 15 | 1nh2_E_DA15_DC16 | AAA | AA02 | 34 | 0.43 |
| 16 | 1nh2_F_DG1_DT2 | A-B | AB04 | 70 | 0.35 |
| 17 | 1nh2_F_DT2_DT3 | B-A | BA01 | 8 | 0.45 |
| 18 | 1nh2_F_DT3_DT4 | AAA | AA02 | 78 | 0.37 |
| 19 | 1nh2_F_DT4_DT5 | AAA | AA02 | 59 | 0.44 |
| 20 | 1nh2_F_DT5_DA6 | AAA | AA02 | 62 | 0.37 |
| 21 | 1nh2_F_DA6_DT7 | AAA | AA02 | 72 | 0.38 |
| 22 | 1nh2_F_DT7_DA8 | A-B | AB01 | 35 | 0.34 |
| 23 | 1nh2_F_DA8_DT9 | BB2 | BB08 | 51 | 0.37 |
| 24 | 1nh2_F_DT9_DA10 | BBB | BB00 | 48 | 0.31 |
| 25 | 1nh2_F_DA10_DC11 | BBB | BB00 | 90 | 0.20 |
| 26 | 1nh2_F_DC11_DA12 | BBB | BB00 | 47 | 0.29 |
| 27 | 1nh2_F_DA12_DT13 | BBB | BB00 | 30 | 0.52 |
| 28 | 1nh2_F_DT13_DA14 | B-A | BA08 | 72 | 0.44 |
| 29 | 1nh2_F_DA14_DC15 | NAN | NANT | 0 | 0.57 |
| 30 | 1nh2_F_DC15_DA16 | NAN | NANT | 0 | 0.60 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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