Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nfk_C_DT1_DG2 | NAN | NANT | 0 | 0.68 |
| 02 | 1nfk_C_DG2_DG3 | BB2 | BB07 | 46 | 0.21 |
| 03 | 1nfk_C_DG3_DG4 | BBw | BB02 | 59 | 0.16 |
| 04 | 1nfk_C_DG4_DA5 | BBB | BB00 | 72 | 0.28 |
| 05 | 1nfk_C_DA5_DA6 | B12 | BB04 | 66 | 0.22 |
| 06 | 1nfk_C_DA6_DT7 | BBw | BB02 | 59 | 0.25 |
| 07 | 1nfk_C_DT7_DT8 | BBw | BB02 | 41 | 0.30 |
| 08 | 1nfk_C_DT8_DC9 | NAN | NANT | 0 | 0.30 |
| 09 | 1nfk_C_DC9_DC10 | NAN | NANT | 0 | 0.34 |
| 10 | 1nfk_C_DC10_DC11 | NAN | NANT | 0 | 0.44 |
| 11 | 1nfk_D_DT1_DG2 | NAN | NANT | 0 | 0.47 |
| 12 | 1nfk_D_DG2_DG3 | BBB | BB00 | 58 | 0.20 |
| 13 | 1nfk_D_DG3_DG4 | miB | BB15 | 70 | 0.21 |
| 14 | 1nfk_D_DG4_DA5 | BBB | BB00 | 56 | 0.37 |
| 15 | 1nfk_D_DA5_DA6 | B12 | BB04 | 49 | 0.23 |
| 16 | 1nfk_D_DA6_DT7 | BBw | BB02 | 56 | 0.23 |
| 17 | 1nfk_D_DT7_DT8 | BBw | BB03 | 93 | 0.23 |
| 18 | 1nfk_D_DT8_DC9 | miB | BB15 | 77 | 0.27 |
| 19 | 1nfk_D_DC9_DC10 | BBw | BB02 | 20 | 0.39 |
| 20 | 1nfk_D_DC10_DC11 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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