Conformers:
ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1nao_A_G1_G2 | NAN | NANT | 0 | 0.43 |
| 02 | 1nao_A_G2_A3 | AAA | AA02 | 9 | 0.33 |
| 03 | 1nao_A_A3_G4 | AAA | AA02 | 17 | 0.33 |
| 04 | 1nao_A_G4_A5 | AAA | AA00 | 7 | 0.46 |
| 05 | 1nao_A_A5_U6 | AAA | AA00 | 25 | 0.49 |
| 06 | 1nao_A_U6_G7 | AAA | AA00 | 47 | 0.29 |
| 07 | 1nao_A_G7_A8 | AAA | AA00 | 12 | 0.45 |
| 08 | 1nao_A_A8_C9 | AAA | AA00 | 43 | 0.46 |
| 09 | 1nao_B_OMG10_OMU11 | AAu | AA12 | 55 | 0.29 |
| 10 | 1nao_B_OMU11_OMC12 | AAA | AA00 | 13 | 0.61 |
| 11 | 1nao_B_OMC12_DA13 | AAA | AA04 | 44 | 0.44 |
| 12 | 1nao_B_DA13_DT14 | AAA | AA00 | 21 | 0.34 |
| 13 | 1nao_B_DT14_DC15 | AAA | AA09 | 65 | 0.26 |
| 14 | 1nao_B_DC15_DT16 | AAA | AA02 | 38 | 0.28 |
| 15 | 1nao_B_DT16_OMC17 | NAN | NANT | 0 | 0.66 |
| 16 | 1nao_B_OMC17_OMC18 | AAA | AA00 | 51 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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