Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RIP-Radiation-damage Induced Phasing

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011n7a_A_U1_BGM2NANNANT00.85 IC03
021n7a_A_BGM2_A3BBBBB00700.38 BB00
031n7a_A_A3_G4OPNOP15370.53 OP15
041n7a_A_G4_G5AAAAA00850.19 AA00
051n7a_A_G5_U6ZZZZZ01650.18 ZZ01
061n7a_B_U1_BGM2NANNANT00.83 IC03
071n7a_B_BGM2_A3BBBBB00660.41 BB00
081n7a_B_A3_G4OPNOP15530.50 OP15
091n7a_B_G4_G5AAAAA00920.16 AA00
101n7a_B_G5_U6ZZZZZ01680.18 ZZ01
111n7a_C_U1_BGM2NANNANT00.83 IC03
121n7a_C_BGM2_A3BBBBB00730.36 BB00
131n7a_C_A3_G4OPNOP15400.55 OP15
141n7a_C_G4_G5AAAAA00900.19 AA00
151n7a_C_G5_U6ZZZZZ01700.16 ZZ01
161n7a_D_U1_BGM2NANNANT00.81 IC03
171n7a_D_BGM2_A3BBBBB00680.39 BB00
181n7a_D_A3_G4OPNOP15400.54 OP15
191n7a_D_G4_G5AAAAA00820.20 AA00
201n7a_D_G5_U6ZZZZZ01610.19 ZZ01
211n7a_E_U1_BGM2NANNANT00.82 IC03
221n7a_E_BGM2_A3BBBBB00690.37 BB00
231n7a_E_A3_G4OPNOP15430.54 OP15
241n7a_E_G4_G5AAAAA00840.19 AA00
251n7a_E_G5_U6ZZZZZ01790.16 ZZ01
261n7a_F_U1_BGM2NANNANT00.82 IC03
271n7a_F_BGM2_A3BBBBB00670.36 BB00
281n7a_F_A3_G4OPNOP15350.54 OP15
291n7a_F_G4_G5AAAAA00870.18 AA00
301n7a_F_G5_U6ZZZZZ01660.16 ZZ01
311n7a_G_U1_BGM2NANNANT00.87 IC03
321n7a_G_BGM2_A3BBBBB00660.39 BB00
331n7a_G_A3_G4OPNOP15430.53 OP15
341n7a_G_G4_G5AAAAA00870.18 AA00
351n7a_G_G5_U6ZZZZZ01670.17 ZZ01
361n7a_H_U1_BGM2NANNANT00.85 IC03
371n7a_H_BGM2_A3BBBBB00650.38 BB00
381n7a_H_A3_G4OPNOP15350.56 OP15
391n7a_H_G4_G5AAAAA00870.20 AA00
401n7a_H_G5_U6ZZZZZ01640.19 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N