DNATCO v4.1: results

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1n78_C_G501_G502	AAA	AA00	45	0.29	AA00
002	1n78_C_G502_C503	AAA	AA00	86	0.17	AA00
003	1n78_C_C503_C504	AAA	AA00	99	0.09	AA00
004	1n78_C_C504_C505	AAA	AA00	92	0.12	AA00
005	1n78_C_C505_C506	AAA	AA00	92	0.21	AA00
006	1n78_C_C506_A507	A-B	AB05	73	0.21	AB05
007	1n78_C_A507_U508	NAN	NANT	0	0.92	OP11
008	1n78_C_U508_C509	NAN	NANT	0	0.47	IC07
009	1n78_C_C509_G510	NAN	NANT	0	1.76	OP04
010	1n78_C_G510_U511	AAA	AA00	65	0.23	AA00
011	1n78_C_U511_C512	AAA	AA00	77	0.21	AA00
012	1n78_C_C512_U513	AAw	AA01	82	0.27	AA01
013	1n78_C_U513_A514	AAu	AA12	75	0.35	AA12
014	1n78_C_A514_G515	NAN	NANT	0	0.63	AB01
015	1n78_C_G515_C516	NAN	NANT	0	1.26	AA05
016	1n78_C_C516_G518	NAN	NANT	0	1.43	OP21
017	1n78_C_G518_G519	NAN	NANT	0	1.06	AB02
018	1n78_C_G519_U520	NAN	NANT	0	1.45	OP01
019	1n78_C_U520.A_A521	NAN	NANT	0	0.68	OP29
020	1n78_C_U520_U520.A	NAN	NANT	0	0.46	OP04
021	1n78_C_A521_G522	AAu	AA07	66	0.37	AA07
022	1n78_C_G522_G523	AAA	AA00	74	0.17	AA00
023	1n78_C_G523_A524	AAA	AA00	95	0.13	AA00
024	1n78_C_A524_C525	AAA	AA00	89	0.16	AA00
025	1n78_C_C525_G526	AAA	AA00	50	0.40	AA00
026	1n78_C_G526_C527	AAA	AA00	91	0.23	AA00
027	1n78_C_C527_G528	AAA	AA00	78	0.20	AA00
028	1n78_C_G528_G529	AAA	AA00	91	0.15	AA00
029	1n78_C_G529_C530	AAA	AA00	91	0.11	AA00
030	1n78_C_C530_C531	AAA	AA00	98	0.12	AA00
031	1n78_C_C531_C532	AAA	AA00	71	0.31	AA00
032	1n78_C_C532_U533	AAA	AA08	66	0.43	AA08
033	1n78_C_U533_C534	NAN	NANT	0	0.62	OP04
034	1n78_C_C534_U535	AAu	AA12	79	0.22	AA12
035	1n78_C_U535_C536	AAA	AA08	84	0.18	AA08
036	1n78_C_C536_A537	AAw	AA01	88	0.15	AA01
037	1n78_C_A537_A538	AAA	AA08	65	0.34	AA08
038	1n78_C_A538_G539	AAA	AA00	77	0.32	AA00
039	1n78_C_G539_G540	AAA	AA00	91	0.09	AA00
040	1n78_C_G540_C541	AAA	AA00	98	0.09	AA00
041	1n78_C_C541_C542	AAA	AA00	95	0.13	AA00
042	1n78_C_C542_G543	AAA	AA00	92	0.24	AA00
043	1n78_C_G543_A544	AAA	AA00	88	0.16	AA00
044	1n78_C_A544_A545	AAA	AA00	71	0.35	AA00
045	1n78_C_A545_A546	NAN	NANT	0	0.81	AA07
046	1n78_C_A546_C548	NAN	NANT	0	1.35	OP08
047	1n78_C_C548_G549	NAN	NANT	0	1.08	OP05
048	1n78_C_G549_G550	AAA	AA00	77	0.17	AA00
049	1n78_C_G550_G551	AAA	AA00	85	0.16	AA00
050	1n78_C_G551_G552	AAw	AA01	74	0.22	AA01
051	1n78_C_G552_G553	NAN	NANT	0	0.53	AA10
052	1n78_C_G553_U554	AAA	AA08	16	0.41	AA08
053	1n78_C_U554_U555	AAA	AA08	88	0.29	AA08
054	1n78_C_U555_C556	OPN	OP04	91	0.19	OP04
055	1n78_C_C556_G557	AAA	AA00	18	0.43	AA00
056	1n78_C_G557_A558	NAN	NANT	0	0.85	AA11
057	1n78_C_A558_U559	NAN	NANT	0	1.37	OP05
058	1n78_C_U559_U560	A-B	AB01	21	0.50	AB01
059	1n78_C_U560_C561	OPN	OP12	52	0.24	OP12
060	1n78_C_C561_C562	AAA	AA00	83	0.17	AA00
061	1n78_C_C562_C563	AAA	AA00	67	0.19	AA00
062	1n78_C_C563_C564	AAA	AA00	91	0.15	AA00
063	1n78_C_C564_C565	AAA	AA00	93	0.23	AA00
064	1n78_C_C565_U566	AAA	AA00	80	0.24	AA00
065	1n78_C_U566_G567	AAA	AA00	91	0.16	AA00
066	1n78_C_G567_G568	AAA	AA00	88	0.13	AA00
067	1n78_C_G568_G569	AAA	AA00	84	0.17	AA00
068	1n78_C_G569_G570	AAA	AA00	52	0.21	AA00
069	1n78_C_G570_U571	AAA	AA00	77	0.22	AA00
070	1n78_C_U571_C572	AAw	AA01	36	0.38	AA01
071	1n78_C_C572_A573	NAN	NANT	0	2.12	OP22
072	1n78_C_A573_C574	NAN	NANT	0	2.18	OP06
073	1n78_C_C574_C575	NAN	NANT	0	1.36	OP31
074	1n78_C_C575_A576	AAw	AA05	44	0.50	AA05
075	1n78_D_G501_G502	AAA	AA00	72	0.22	AA00
076	1n78_D_G502_C503	AAA	AA00	90	0.16	AA00
077	1n78_D_C503_C504	AAA	AA00	82	0.12	AA00
078	1n78_D_C504_C505	AAA	AA00	92	0.13	AA00
079	1n78_D_C505_C506	AAA	AA00	95	0.18	AA00
080	1n78_D_C506_A507	NAN	NANT	0	0.43	AB04
081	1n78_D_A507_U508	NAN	NANT	0	1.68	OP16
082	1n78_D_U508_C509	NAN	NANT	0	0.48	IC07
083	1n78_D_C509_G510	NAN	NANT	0	1.80	OP04
084	1n78_D_G510_U511	AAA	AA00	77	0.21	AA00
085	1n78_D_U511_C512	AAA	AA00	76	0.21	AA00
086	1n78_D_C512_U513	AAw	AA01	86	0.25	AA01
087	1n78_D_U513_A514	AAu	AA12	77	0.37	AA12
088	1n78_D_A514_G515	A-B	AB01	12	0.62	AB01
089	1n78_D_G515_C516	NAN	NANT	0	1.17	AA05
090	1n78_D_C516_G518	NAN	NANT	0	1.42	OP21
091	1n78_D_G518_G519	NAN	NANT	0	1.09	AB02
092	1n78_D_G519_U520	NAN	NANT	0	2.11	OP15
093	1n78_D_U520.A_A521	NAN	NANT	0	0.66	OP29
094	1n78_D_U520_U520.A	NAN	NANT	0	0.48	OP04
095	1n78_D_A521_G522	AAu	AA07	65	0.35	AA07
096	1n78_D_G522_G523	AAA	AA00	75	0.17	AA00
097	1n78_D_G523_A524	AAA	AA00	89	0.11	AA00
098	1n78_D_A524_C525	AAA	AA00	86	0.17	AA00
099	1n78_D_C525_G526	AAA	AA00	63	0.37	AA00
100	1n78_D_G526_C527	AAA	AA00	84	0.21	AA00
101	1n78_D_C527_G528	AAA	AA00	72	0.18	AA00
102	1n78_D_G528_G529	AAA	AA00	88	0.14	AA00
103	1n78_D_G529_C530	AAA	AA00	93	0.12	AA00
104	1n78_D_C530_C531	AAA	AA00	97	0.18	AA00
105	1n78_D_C531_C532	AAA	AA00	59	0.34	AA00
106	1n78_D_C532_U533	AAA	AA08	57	0.46	AA08
107	1n78_D_U533_C534	NAN	NANT	0	0.56	OP04
108	1n78_D_C534_U535	AAu	AA12	87	0.19	AA12
109	1n78_D_U535_C536	AAA	AA08	87	0.21	AA08
110	1n78_D_C536_A537	AAw	AA01	87	0.16	AA01
111	1n78_D_A537_A538	AAA	AA08	72	0.34	AA08
112	1n78_D_A538_G539	AAA	AA00	69	0.36	AA00
113	1n78_D_G539_G540	AAA	AA00	92	0.07	AA00
114	1n78_D_G540_C541	AAA	AA00	94	0.11	AA00
115	1n78_D_C541_C542	AAA	AA00	92	0.17	AA00
116	1n78_D_C542_G543	AAA	AA00	94	0.23	AA00
117	1n78_D_G543_A544	AAA	AA00	92	0.14	AA00
118	1n78_D_A544_A545	AAA	AA00	70	0.36	AA00
119	1n78_D_A545_A546	NAN	NANT	0	0.84	AA07
120	1n78_D_A546_C548	NAN	NANT	0	0.89	BB13
121	1n78_D_C548_G549	NAN	NANT	0	1.11	OP05
122	1n78_D_G549_G550	AAA	AA00	82	0.15	AA00
123	1n78_D_G550_G551	AAA	AA00	89	0.13	AA00
124	1n78_D_G551_G552	AAw	AA01	56	0.29	AA01
125	1n78_D_G552_G553	NAN	NANT	0	0.55	AA10
126	1n78_D_G553_U554	AAA	AA08	21	0.45	AA08
127	1n78_D_U554_U555	AAA	AA08	86	0.29	AA08
128	1n78_D_U555_C556	OPN	OP04	88	0.20	OP04
129	1n78_D_C556_G557	AAA	AA00	13	0.44	AA00
130	1n78_D_G557_A558	NAN	NANT	0	0.87	AA11
131	1n78_D_A558_U559	NAN	NANT	0	1.35	OP05
132	1n78_D_U559_U560	A-B	AB01	16	0.50	AB01
133	1n78_D_U560_C561	OPN	OP12	35	0.28	OP12
134	1n78_D_C561_C562	AAA	AA00	70	0.21	AA00
135	1n78_D_C562_C563	AAA	AA00	86	0.15	AA00
136	1n78_D_C563_C564	AAA	AA00	91	0.10	AA00
137	1n78_D_C564_C565	AAA	AA00	87	0.24	AA00
138	1n78_D_C565_U566	AAA	AA00	61	0.29	AA00
139	1n78_D_U566_G567	AAA	AA00	79	0.20	AA00
140	1n78_D_G567_G568	AAA	AA00	84	0.11	AA00
141	1n78_D_G568_G569	AAA	AA00	79	0.11	AA00
142	1n78_D_G569_G570	AAA	AA00	85	0.18	AA00
143	1n78_D_G570_U571	AAA	AA00	86	0.20	AA00
144	1n78_D_U571_C572	AAw	AA01	53	0.33	AA01
145	1n78_D_C572_A573	NAN	NANT	0	1.85	OP10
146	1n78_D_A573_C574	NAN	NANT	0	2.19	OP06
147	1n78_D_C574_C575	NAN	NANT	0	1.30	OP31
148	1n78_D_C575_A576	AAw	AA05	46	0.57	AA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible