Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 2 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1n6j-m1_C_DA3_DG4 | BBw | BB03 | 25 | 0.50 |
| 02 | 1n6j-m2_C_DA3_DG4 | BBw | BB11 | 43 | 0.39 |
| 03 | 1n6j-m1_C_DG4_DC5 | BBw | BB02 | 31 | 0.34 |
| 04 | 1n6j-m2_C_DG4_DC5 | BBw | BB02 | 42 | 0.41 |
| 05 | 1n6j-m1_C_DC5_DT6 | BBw | BB03 | 78 | 0.24 |
| 06 | 1n6j-m2_C_DC5_DT6 | miB | BB13 | 85 | 0.30 |
| 07 | 1n6j-m1_C_DT6_DA7 | BBB | BB00 | 44 | 0.35 |
| 08 | 1n6j-m2_C_DT6_DA7 | BBB | BB00 | 39 | 0.47 |
| 09 | 1n6j-m1_C_DA7_DT8 | BBw | BB02 | 69 | 0.27 |
| 10 | 1n6j-m2_C_DA7_DT8 | BBw | BB02 | 30 | 0.42 |
| 11 | 1n6j-m1_C_DT8_DT9 | BBB | BB00 | 69 | 0.25 |
| 12 | 1n6j-m2_C_DT8_DT9 | BBB | BB00 | 59 | 0.31 |
| 13 | 1n6j-m1_C_DT9_DT10 | BBw | BB02 | 84 | 0.17 |
| 14 | 1n6j-m2_C_DT9_DT10 | BBB | BB00 | 67 | 0.22 |
| 15 | 1n6j-m1_C_DT10_DA11 | BBB | BB00 | 62 | 0.23 |
| 16 | 1n6j-m2_C_DT10_DA11 | BBB | BB00 | 62 | 0.28 |
| 17 | 1n6j-m1_C_DA11_DT12 | BBw | BB02 | 53 | 0.25 |
| 18 | 1n6j-m2_C_DA11_DT12 | BBw | BB02 | 84 | 0.17 |
| 19 | 1n6j-m1_C_DT12_DA13 | NAN | NANT | 0 | 0.50 |
| 20 | 1n6j-m2_C_DT12_DA13 | B12 | BB04 | 42 | 0.39 |
| 21 | 1n6j-m1_C_DA13_DA14 | BBw | BB02 | 55 | 0.25 |
| 22 | 1n6j-m2_C_DA13_DA14 | BBB | BB00 | 62 | 0.19 |
| 23 | 1n6j-m1_C_DA14_DG15 | BBB | BB00 | 41 | 0.29 |
| 24 | 1n6j-m2_C_DA14_DG15 | BBB | BB00 | 59 | 0.26 |
| 25 | 1n6j-m1_C_DG15_DC16 | B12 | BB04 | 20 | 0.33 |
| 26 | 1n6j-m2_C_DG15_DC16 | BBw | BB02 | 56 | 0.25 |
| 27 | 1n6j-m1_D_DG3_DC4 | BBB | BB00 | 26 | 0.58 |
| 28 | 1n6j-m2_D_DG3_DC4 | NAN | NANT | 0 | 0.53 |
| 29 | 1n6j-m1_D_DC4_DT5 | BBw | BB02 | 19 | 0.35 |
| 30 | 1n6j-m2_D_DC4_DT5 | NAN | NANT | 0 | 0.71 |
| 31 | 1n6j-m1_D_DT5_DT6 | BBB | BB00 | 56 | 0.21 |
| 32 | 1n6j-m2_D_DT5_DT6 | BBB | BB00 | 56 | 0.21 |
| 33 | 1n6j-m1_D_DT6_DA7 | B12 | BB04 | 56 | 0.27 |
| 34 | 1n6j-m2_D_DT6_DA7 | B12 | BB04 | 47 | 0.35 |
| 35 | 1n6j-m1_D_DA7_DT8 | BBw | BB02 | 78 | 0.23 |
| 36 | 1n6j-m2_D_DA7_DT8 | BBw | BB02 | 80 | 0.19 |
| 37 | 1n6j-m1_D_DT8_DA9 | BBB | BB00 | 64 | 0.28 |
| 38 | 1n6j-m2_D_DT8_DA9 | BBB | BB00 | 59 | 0.31 |
| 39 | 1n6j-m1_D_DA9_DA10 | BBw | BB02 | 87 | 0.16 |
| 40 | 1n6j-m2_D_DA9_DA10 | BBB | BB00 | 68 | 0.21 |
| 41 | 1n6j-m1_D_DA10_DA11 | BBB | BB00 | 66 | 0.23 |
| 42 | 1n6j-m2_D_DA10_DA11 | BBw | BB02 | 58 | 0.30 |
| 43 | 1n6j-m1_D_DA11_DT12 | BBB | BB00 | 39 | 0.22 |
| 44 | 1n6j-m2_D_DA11_DT12 | BBB | BB00 | 47 | 0.29 |
| 45 | 1n6j-m1_D_DT12_DA13 | BB2 | BB07 | 34 | 0.38 |
| 46 | 1n6j-m2_D_DT12_DA13 | B12 | BB04 | 56 | 0.33 |
| 47 | 1n6j-m1_D_DA13_DG14 | BBB | BB00 | 59 | 0.24 |
| 48 | 1n6j-m2_D_DA13_DG14 | BBB | BB00 | 57 | 0.33 |
| 49 | 1n6j-m1_D_DG14_DC15 | BBw | BB02 | 57 | 0.20 |
| 50 | 1n6j-m2_D_DG14_DC15 | BBw | BB02 | 42 | 0.28 |
| 51 | 1n6j-m1_D_DC15_DT16 | BBB | BB00 | 28 | 0.25 |
| 52 | 1n6j-m2_D_DC15_DT16 | BBB | BB00 | 31 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|