Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1n5y_T_DT705_DA706 | NAN | NANT | 0 | 0.45 |
| 02 | 1n5y_T_DA706_DG707 | AAA | AA00 | 67 | 0.21 |
| 03 | 1n5y_T_DG707_DG708 | AAA | AA00 | 23 | 0.28 |
| 04 | 1n5y_T_DG708_DC709 | AAA | AA00 | 35 | 0.25 |
| 05 | 1n5y_T_DC709_DG710 | AAA | AA04 | 29 | 0.37 |
| 06 | 1n5y_T_DG710_DC711 | AAA | AA00 | 22 | 0.34 |
| 07 | 1n5y_T_DC711_DC712 | AAA | AA02 | 11 | 0.49 |
| 08 | 1n5y_T_DC712_DC713 | NAN | NANT | 0 | 0.44 |
| 09 | 1n5y_T_DC713_DG714 | NAN | NANT | 0 | 0.75 |
| 10 | 1n5y_T_DG714_DA715 | BBB | BB00 | 51 | 0.40 |
| 11 | 1n5y_T_DA715_DA716 | miB | BB10 | 67 | 0.36 |
| 12 | 1n5y_T_DA716_DC717 | BBB | BB00 | 41 | 0.45 |
| 13 | 1n5y_T_DC717_DA718 | BBB | BB00 | 58 | 0.26 |
| 14 | 1n5y_T_DA718_DG719 | BBB | BB00 | 84 | 0.18 |
| 15 | 1n5y_T_DG719_DG720 | B12 | BB04 | 84 | 0.15 |
| 16 | 1n5y_T_DG720_DG721 | miB | BB10 | 66 | 0.26 |
| 17 | 1n5y_T_DG721_DA722 | BBB | BB00 | 68 | 0.28 |
| 18 | 1n5y_T_DA722_DC723 | NAN | NANT | 0 | 0.40 |
| 19 | 1n5y_T_DC723_DT724 | BBB | BB00 | 17 | 0.28 |
| 20 | 1n5y_T_DT724_DG725 | B12 | BB04 | 11 | 0.38 |
| 21 | 1n5y_P_DC803_DA804 | BBB | BB00 | 23 | 0.50 |
| 22 | 1n5y_P_DA804_DG805 | BBB | BB00 | 49 | 0.27 |
| 23 | 1n5y_P_DG805_DT806 | BBw | BB02 | 43 | 0.23 |
| 24 | 1n5y_P_DT806_DC807 | BBB | BB00 | 60 | 0.28 |
| 25 | 1n5y_P_DC807_DC808 | BBw | BB02 | 21 | 0.38 |
| 26 | 1n5y_P_DC808_DC809 | BBB | BB00 | 50 | 0.30 |
| 27 | 1n5y_P_DC809_DT810 | B12 | BB04 | 60 | 0.21 |
| 28 | 1n5y_P_DT810_DG811 | BBB | BB00 | 70 | 0.23 |
| 29 | 1n5y_P_DG811_DT812 | BBB | BB00 | 83 | 0.21 |
| 30 | 1n5y_P_DT812_DT813 | BBB | BB00 | 80 | 0.24 |
| 31 | 1n5y_P_DT813_DC814 | BBB | BB00 | 75 | 0.20 |
| 32 | 1n5y_P_DC814_DG815 | B-A | BA08 | 25 | 0.38 |
| 33 | 1n5y_P_DG815_DG816 | AAA | AA02 | 60 | 0.45 |
| 34 | 1n5y_P_DG816_MRG817 | NAN | NANT | 0 | 0.56 |
| 35 | 1n5y_P_MRG817_DC818 | NAN | NANT | 0 | 0.48 |
| 36 | 1n5y_P_DC818_DG819 | NAN | NANT | 0 | 0.48 |
| 37 | 1n5y_P_DG819_DC820 | NAN | NANT | 0 | 0.44 |
| 38 | 1n5y_P_DC820_DC821 | NAN | NANT | 0 | 0.55 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|