Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1n48_B_DG1801_DG1802 | BBB | BB00 | 78 | 0.22 |
| 02 | 1n48_B_DG1802_DG1803 | BB2 | BB07 | 69 | 0.29 |
| 03 | 1n48_B_DG1803_DG1804 | BBB | BB00 | 45 | 0.46 |
| 04 | 1n48_B_DG1804_DG1805 | NAN | NANT | 0 | 0.40 |
| 05 | 1n48_B_DG1805_DA1806 | BB2 | BB07 | 46 | 0.41 |
| 06 | 1n48_B_DA1806_DA1807 | BBB | BB00 | 82 | 0.25 |
| 07 | 1n48_B_DA1807_DG1808 | B12 | BB04 | 78 | 0.17 |
| 08 | 1n48_B_DG1808_DG1809 | BBB | BB00 | 77 | 0.29 |
| 09 | 1n48_B_DG1809_DA1810 | BBB | BB00 | 95 | 0.11 |
| 10 | 1n48_B_DA1810_DC1811 | BBB | BB00 | 90 | 0.22 |
| 11 | 1n48_B_DC1811_DT1812 | BBB | BB00 | 89 | 0.22 |
| 12 | 1n48_C_DC1903_DA1904 | NAN | NANT | 0 | 0.44 |
| 13 | 1n48_C_DT1906_DA1907 | BBB | BB00 | 42 | 0.47 |
| 14 | 1n48_C_DA1907_DG1908 | BBB | BB00 | 89 | 0.12 |
| 15 | 1n48_C_DG1908_DT1909 | BBB | BB00 | 92 | 0.16 |
| 16 | 1n48_C_DT1909_DC1910 | BBB | BB00 | 73 | 0.24 |
| 17 | 1n48_C_DC1910_DC1911 | BBB | BB00 | 79 | 0.27 |
| 18 | 1n48_C_DC1911_DT1912 | BBB | BB00 | 80 | 0.21 |
| 19 | 1n48_C_DT1912_DT1913 | BBB | BB00 | 69 | 0.20 |
| 20 | 1n48_C_DT1913_DC1914 | BBB | BB00 | 73 | 0.22 |
| 21 | 1n48_C_DC1914_DC1915 | BBB | BB00 | 79 | 0.18 |
| 22 | 1n48_C_DC1915_DC1916 | BBB | BB00 | 66 | 0.35 |
| 23 | 1n48_C_DC1916_DC1917 | BBB | BB01 | 77 | 0.26 |
| 24 | 1n48_C_DC1917_DC1918 | B-A | BA01 | 13 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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