Conformers:
ABBIImiBZICOPNSYNN
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Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1n3c_B_DG1_DG2 | NAN | NANT | 0 | 0.33 |
| 02 | 1n3c_B_DG2_DT3 | NAN | NANT | 0 | 0.45 |
| 03 | 1n3c_B_DT3_DA4 | BBB | BB00 | 51 | 0.28 |
| 04 | 1n3c_B_DA4_DG5 | miB | BB13 | 86 | 0.20 |
| 05 | 1n3c_B_DG5_DA6 | BBB | BB00 | 42 | 0.44 |
| 06 | 1n3c_B_DA6_DC7 | BBB | BB00 | 76 | 0.20 |
| 07 | 1n3c_B_DC7_DC8 | NAN | NANT | 0 | 0.96 |
| 08 | 1n3c_B_DC8_DT9 | BBB | BB00 | 70 | 0.41 |
| 09 | 1n3c_B_DT9_DG10 | B12 | BB04 | 72 | 0.35 |
| 10 | 1n3c_B_DG10_DG11 | BB2 | BB07 | 69 | 0.31 |
| 11 | 1n3c_B_DG11_DA12 | BBB | BB00 | 92 | 0.14 |
| 12 | 1n3c_B_DA12_DC13 | miB | BB13 | 77 | 0.22 |
| 13 | 1n3c_B_DC13_DG14 | BBB | BB00 | 28 | 0.60 |
| 14 | 1n3c_B_DG14_DC15 | B12 | BB04 | 80 | 0.23 |
| 15 | 1n3c_C_DG16_DC17 | NAN | NANT | 0 | 0.77 |
| 16 | 1n3c_C_DC17_DG18 | BBw | BB11 | 68 | 0.36 |
| 17 | 1n3c_C_DG18_DT19 | BBw | BB03 | 49 | 0.38 |
| 18 | 1n3c_C_DT19_DC20 | BBB | BB00 | 45 | 0.42 |
| 19 | 1n3c_C_DC20_DC21 | BBB | BB00 | 95 | 0.15 |
| 20 | 1n3c_C_DC21_DA22 | B12 | BB04 | 94 | 0.13 |
| 21 | 1n3c_C_DA22_8OG23 | NAN | NANT | 0 | 0.83 |
| 22 | 1n3c_C_8OG23_DG24 | NAN | NANT | 0 | 1.04 |
| 23 | 1n3c_C_DG24_DT25 | BBB | BB00 | 84 | 0.30 |
| 24 | 1n3c_C_DT25_DC26 | BBB | BB00 | 90 | 0.16 |
| 25 | 1n3c_C_DC26_DT27 | BBB | BB00 | 90 | 0.12 |
| 26 | 1n3c_C_DT27_DA28 | BBw | BB11 | 83 | 0.34 |
| 27 | 1n3c_C_DA28_DC29 | BBB | BB00 | 44 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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