Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1msw_T_DG112_DT111 | NAN | NANT | 0 | 1.01 |
| 02 | 1msw_T_DT113_DG112 | NAN | NANT | 0 | 1.60 |
| 03 | 1msw_T_DG114_DT113 | BBB | BB00 | 46 | 0.39 |
| 04 | 1msw_T_DC115_DG114 | BBB | BB00 | 64 | 0.26 |
| 05 | 1msw_T_DC116_DC115 | BBB | BB00 | 53 | 0.36 |
| 06 | 1msw_T_DG117_DC116 | BBw | BB02 | 70 | 0.27 |
| 07 | 1msw_T_DC118_DG117 | BBB | BB00 | 36 | 0.38 |
| 08 | 1msw_T_DT119_DC118 | BBB | BB00 | 39 | 0.30 |
| 09 | 1msw_T_DT120_DT119 | NAN | NANT | 0 | 0.93 |
| 10 | 1msw_T_DA121_DT120 | NAN | NANT | 0 | 0.84 |
| 11 | 1msw_T_DC122_DA121 | miB | BB13 | 58 | 0.33 |
| 12 | 1msw_T_DG123_DC122 | BBw | BB02 | 65 | 0.21 |
| 13 | 1msw_T_DC124_DG123 | B12 | BB04 | 51 | 0.31 |
| 14 | 1msw_T_DG125_DC124 | BBB | BB00 | 39 | 0.44 |
| 15 | 1msw_T_DT126_DG125 | NAN | NANT | 0 | 0.46 |
| 16 | 1msw_T_DG127_DT126 | BBB | BB00 | 20 | 0.56 |
| 17 | 1msw_T_DC128_DG127 | NAN | NANT | 0 | 1.23 |
| 18 | 1msw_T_DC129_DC128 | NAN | NANT | 0 | 0.66 |
| 19 | 1msw_T_DG130_DC129 | NAN | NANT | 0 | 0.38 |
| 20 | 1msw_N_DT14_DT15 | NAN | NANT | 0 | 1.25 |
| 21 | 1msw_N_DT15_DT16 | NAN | NANT | 0 | 1.84 |
| 22 | 1msw_N_DT16_DA17 | miB | BB13 | 73 | 0.44 |
| 23 | 1msw_N_DA17_DC18 | NAN | NANT | 0 | 1.85 |
| 24 | 1msw_N_DC18_DG19 | BBw | BB16 | 31 | 0.53 |
| 25 | 1msw_N_DG19_DT20 | NAN | NANT | 0 | 0.42 |
| 26 | 1msw_N_DT20_DT21 | NAN | NANT | 0 | 0.62 |
| 27 | 1msw_N_DT21_DG22 | miB | BB13 | 76 | 0.31 |
| 28 | 1msw_N_DG22_DC23 | BBB | BB00 | 53 | 0.34 |
| 29 | 1msw_N_DC23_DG24 | BBw | BB02 | 69 | 0.23 |
| 30 | 1msw_N_DG24_DC25 | BBB | BB00 | 62 | 0.33 |
| 31 | 1msw_N_DC25_DA26 | BBw | BB02 | 60 | 0.22 |
| 32 | 1msw_N_DA26_DC27 | miB | BB13 | 83 | 0.31 |
| 33 | 1msw_N_DC27_DG28 | NAN | NANT | 0 | 1.16 |
| 34 | 1msw_N_DG28_DG29 | BBB | BB00 | 32 | 0.35 |
| 35 | 1msw_N_DG29_DC30 | BBw | BB11 | 41 | 0.55 |
| 36 | 1msw_R_G2_A1 | AAA | AA00 | 70 | 0.15 |
| 37 | 1msw_R_C3_G2 | AAA | AA00 | 63 | 0.23 |
| 38 | 1msw_R_G4_C3 | AAA | AA00 | 89 | 0.18 |
| 39 | 1msw_R_G5_G4 | AAA | AA08 | 75 | 0.24 |
| 40 | 1msw_R_C6_G5 | AAA | AA00 | 76 | 0.12 |
| 41 | 1msw_R_A7_C6 | AAA | AA00 | 74 | 0.23 |
| 42 | 1msw_R_C8_A7 | AAw | AA05 | 20 | 0.55 |
| 43 | 1msw_R_A9_C8 | NAN | NANT | 0 | 0.80 |
| 44 | 1msw_R_G10_A9 | NAN | NANT | 0 | 0.72 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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