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Conformers: ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011mse_A_DC1_DC2BBBBB00270.42 BB00
021mse_A_DC2_DT3B-ABA05240.39 BA05
031mse_A_DT3_DA4BBBBB00440.33 BB00
041mse_A_DA4_DA5NANNANT00.23 BA05
051mse_A_DA5_DC6B-ABA05480.51 BA05
061mse_A_DC6_DT7BBBBB01750.18 BB01
071mse_A_DT7_DG8BBBBB00640.23 BB00
081mse_A_DG8_DA9BBBBB01800.11 BB01
091mse_A_DA9_DC10BBBBB01270.23 BB01
101mse_A_DC10_DA11BBBBB01100.33 BB01
111mse_B_DT22_DG23B-ABA05660.34 BA05
121mse_B_DG23_DT24BBBBB01540.19 BB01
131mse_B_DT24_DC25BBBBB01500.26 BB01
141mse_B_DC25_DA26BBBBB01460.25 BB01
151mse_B_DA26_DG27B-ABA05250.27 BA05
161mse_B_DG27_DT28BBBBB01520.35 BB01
171mse_B_DT28_DT29BBBBB01460.33 BB01
181mse_B_DT29_DA30BBBBB01200.28 BB01
191mse_B_DA30_DG31BBBBB01520.28 BB01
201mse_B_DG31_DG32BBBBB01670.12 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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