Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1mnm_E_DG1_DA2 | BBw | BB16 | 59 | 0.56 |
| 02 | 1mnm_E_DA2_DT3 | BBw | BB02 | 84 | 0.20 |
| 03 | 1mnm_E_DT3_DT4 | BBB | BB00 | 83 | 0.22 |
| 04 | 1mnm_E_DT4_DA5 | BB2 | BB07 | 59 | 0.21 |
| 05 | 1mnm_E_DA5_DC6 | B12 | BB04 | 60 | 0.33 |
| 06 | 1mnm_E_DC6_DC7 | BBB | BB00 | 71 | 0.26 |
| 07 | 1mnm_E_DC7_DT8 | BBB | BB00 | 85 | 0.22 |
| 08 | 1mnm_E_DT8_DA9 | BB2 | BB07 | 84 | 0.29 |
| 09 | 1mnm_E_DA9_DA10 | BBB | BB00 | 88 | 0.17 |
| 10 | 1mnm_E_DA10_DT11 | BBB | BB00 | 84 | 0.24 |
| 11 | 1mnm_E_DT11_DA12 | B12 | BB04 | 87 | 0.21 |
| 12 | 1mnm_E_DA12_DG13 | BBB | BB00 | 85 | 0.25 |
| 13 | 1mnm_E_DG13_DG14 | BB2 | BB07 | 87 | 0.27 |
| 14 | 1mnm_E_DG14_DG15 | BBB | BB00 | 90 | 0.23 |
| 15 | 1mnm_E_DG15_DA16 | BBB | BB00 | 82 | 0.19 |
| 16 | 1mnm_E_DA16_DA17 | BBB | BB00 | 64 | 0.29 |
| 17 | 1mnm_E_DA17_DA18 | BBB | BB00 | 67 | 0.32 |
| 18 | 1mnm_E_DA18_DT19 | BBw | BB02 | 90 | 0.21 |
| 19 | 1mnm_E_DT19_DT20 | BBB | BB00 | 71 | 0.21 |
| 20 | 1mnm_E_DT20_DT21 | BB2 | BB08 | 19 | 0.41 |
| 21 | 1mnm_E_DT21_DA22 | BBB | BB00 | 84 | 0.25 |
| 22 | 1mnm_E_DA22_DC23 | BBw | BB02 | 67 | 0.27 |
| 23 | 1mnm_E_DC23_DA24 | BBB | BB00 | 68 | 0.30 |
| 24 | 1mnm_E_DA24_DC25 | miB | BB15 | 47 | 0.26 |
| 25 | 1mnm_E_DC25_DG26 | BBB | BB00 | 54 | 0.31 |
| 26 | 1mnm_F_DC27_DC28 | NAN | NANT | 0 | 0.41 |
| 27 | 1mnm_F_DC28_DG29 | BBB | BB00 | 57 | 0.34 |
| 28 | 1mnm_F_DG29_DT30 | BBw | BB02 | 91 | 0.15 |
| 29 | 1mnm_F_DT30_DG31 | BBB | BB00 | 78 | 0.20 |
| 30 | 1mnm_F_DG31_DT32 | BBB | BB00 | 94 | 0.19 |
| 31 | 1mnm_F_DT32_DA33 | BB2 | BB07 | 69 | 0.30 |
| 32 | 1mnm_F_DA33_DA34 | BBB | BB00 | 91 | 0.16 |
| 33 | 1mnm_F_DA34_DA35 | BBB | BB00 | 84 | 0.17 |
| 34 | 1mnm_F_DA35_DT36 | BBB | BB00 | 76 | 0.32 |
| 35 | 1mnm_F_DT36_DT37 | BBB | BB00 | 83 | 0.20 |
| 36 | 1mnm_F_DT37_DT38 | BBB | BB00 | 65 | 0.41 |
| 37 | 1mnm_F_DT38_DC39 | miB | BB10 | 28 | 0.29 |
| 38 | 1mnm_F_DC39_DC40 | BBB | BB00 | 34 | 0.16 |
| 39 | 1mnm_F_DC40_DC41 | BBB | BB00 | 61 | 0.16 |
| 40 | 1mnm_F_DC41_DT42 | B12 | BB04 | 60 | 0.31 |
| 41 | 1mnm_F_DT42_DA43 | BBB | BB00 | 61 | 0.27 |
| 42 | 1mnm_F_DA43_DT44 | BBB | BB00 | 80 | 0.21 |
| 43 | 1mnm_F_DT44_DT45 | BBB | BB00 | 80 | 0.28 |
| 44 | 1mnm_F_DT45_DA46 | BBB | BB00 | 80 | 0.25 |
| 45 | 1mnm_F_DA46_DG47 | BB2 | BB07 | 74 | 0.29 |
| 46 | 1mnm_F_DG47_DG48 | BBB | BB00 | 80 | 0.26 |
| 47 | 1mnm_F_DG48_DT49 | BBB | BB00 | 95 | 0.17 |
| 48 | 1mnm_F_DT49_DA50 | B12 | BB04 | 85 | 0.23 |
| 49 | 1mnm_F_DA50_DA51 | BBB | BB00 | 87 | 0.20 |
| 50 | 1mnm_F_DA51_DT52 | BBB | BB00 | 75 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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