DNATCO v4.1: results

THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE

Results of the assignment of 78 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1mme_A_U21_C30	AAA	AA00	23	0.41	AA00
02	1mme_A_G22_U21	AAA	AA00	35	0.30	AA00
03	1mme_A_G23_G22	NAN	NANT	0	0.76	AA11
04	1mme_A_U24_G23	AAA	AA00	76	0.18	AA00
05	1mme_A_G25_U24	AAA	AA00	26	0.39	AA00
06	1mme_A_C30_U40	AAA	AA02	48	0.34	AA02
07	1mme_A_U40_G50	NAN	NANT	0	0.21	OP04
08	1mme_A_G50_A60	NAN	NANT	0	0.49	AA03
09	1mme_A_A60_U70	NAN	NANT	0	0.47	OP01
10	1mme_A_U70_G80	NAN	NANT	0	0.62	AA04
11	1mme_A_G80_A90	NAN	NANT	0	0.73	AA13
12	1mme_A_A90_G101	AAw	AA05	37	0.32	AA05
13	1mme_A_G101_G102	AAw	AA06	82	0.38	AA06
14	1mme_A_G102_C103	NAN	NANT	0	0.38	AA11
15	1mme_A_C103_C104	AAw	AA11	31	0.29	AA11
16	1mme_B_A11_C12	AAA	AA04	84	0.25	AA04
17	1mme_B_C12_C13	AAA	AA00	48	0.36	AA00
18	1mme_B_C13_A14	AAA	AA00	70	0.21	AA00
19	1mme_B_A14_C15	AAA	AA08	82	0.16	AA08
20	1mme_B_G31.L_U32.L	NAN	NANT	0	1.85	OP17
21	1mme_B_U32.L_A33.L	AAw	AA06	14	0.77	AA06
22	1mme_B_A33.L_A34.L	AAA	AA09	20	0.21	AA09
23	1mme_B_A34.L_G164	AAw	AA05	21	0.51	AA05
24	1mme_B_C111_G120	AAw	AA01	21	0.49	AA01
25	1mme_B_C112_C111	NAN	NANT	0	0.57	AA03
26	1mme_B_G113_C112	AAw	AA06	32	0.30	AA06
27	1mme_B_G114_G113	AAA	AA08	71	0.24	AA08
28	1mme_B_G120_A130	AAu	AA07	28	0.46	AA07
29	1mme_B_A130_A140	AAA	AA08	10	0.51	AA08
30	1mme_B_A140_A151	AAA	AA00	30	0.36	AA00
31	1mme_B_A151_C152	AAw	AA01	12	0.29	AA01
32	1mme_B_C152_U153	AAA	AA08	48	0.34	AA08
33	1mme_B_U153_C154	AAA	AA00	63	0.26	AA00
34	1mme_B_C154_G31.L	NAN	NANT	0	0.42	AA10
35	1mme_B_U161_C170	NAN	NANT	0	1.00	IC03
36	1mme_B_G162_U161	NAN	NANT	0	0.41	AA03
37	1mme_B_A163_G162	AAA	AA00	52	0.25	AA00
38	1mme_B_G164_A163	AAA	AA08	66	0.23	AA08
39	1mme_B_C170_A11	AAA	AA08	76	0.22	AA08
40	1mme_C_U21_C30	AAA	AA00	48	0.37	AA00
41	1mme_C_G22_U21	AAA	AA00	58	0.23	AA00
42	1mme_C_G23_G22	AAw	AA01	86	0.22	AA01
43	1mme_C_U24_G23	AAA	AA00	82	0.19	AA00
44	1mme_C_G25_U24	AAA	AA08	50	0.34	AA08
45	1mme_C_C30_U40	AAA	AA09	27	0.29	AA09
46	1mme_C_U40_G50	OPN	OP04	26	0.22	OP04
47	1mme_C_G50_A60	AAA	AA00	29	0.42	AA00
48	1mme_C_A60_U70	OPN	OP01	61	0.36	OP01
49	1mme_C_U70_G80	NAN	NANT	0	0.67	BB17
50	1mme_C_G80_A90	NAN	NANT	0	1.50	BB14
51	1mme_C_A90_G101	AAw	AA05	53	0.43	AA05
52	1mme_C_G101_G102	AAA	AA08	67	0.27	AA08
53	1mme_C_G102_C103	AAA	AA08	81	0.21	AA08
54	1mme_C_C103_C104	AAA	AA00	68	0.18	AA00
55	1mme_D_A11_C12	AAw	AA06	71	0.40	AA06
56	1mme_D_C12_C13	AAA	AA00	46	0.38	AA00
57	1mme_D_C13_A14	AAA	AA00	62	0.24	AA00
58	1mme_D_A14_C15	AAA	AA03	36	0.26	AA03
59	1mme_D_G31.L_U32.L	NAN	NANT	0	0.47	OP03
60	1mme_D_U32.L_A33.L	AAw	AA06	57	0.57	AA06
61	1mme_D_A33.L_A34.L	AAA	AA09	75	0.14	AA09
62	1mme_D_A34.L_G164	NAN	NANT	0	1.01	AA10
63	1mme_D_C111_G120	AAA	AA00	39	0.47	AA00
64	1mme_D_C112_C111	AAA	AA00	64	0.23	AA00
65	1mme_D_G113_C112	AAA	AA00	50	0.25	AA00
66	1mme_D_G114_G113	AAA	AA00	66	0.29	AA00
67	1mme_D_G120_A130	AAu	AA12	69	0.41	AA12
68	1mme_D_A130_A140	NAN	NANT	0	0.60	AA04
69	1mme_D_A140_A151	AAA	AA00	56	0.30	AA00
70	1mme_D_A151_C152	AAA	AA04	38	0.34	AA04
71	1mme_D_C152_U153	AAA	AA08	55	0.26	AA08
72	1mme_D_U153_C154	AAA	AA00	45	0.24	AA00
73	1mme_D_C154_G31.L	NAN	NANT	0	0.60	BB02
74	1mme_D_U161_C170	AAu	AA13	12	0.68	AA13
75	1mme_D_G162_U161	AAA	AA08	39	0.49	AA08
76	1mme_D_A163_G162	AAA	AA00	84	0.13	AA00
77	1mme_D_G164_A163	AAA	AA08	84	0.23	AA08
78	1mme_D_C170_A11	AAA	AA00	80	0.21	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 78 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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