Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1mhk_S_C1_C2 | AAA | AA00 | 93 | 0.12 |
| 02 | 1mhk_S_C2_A3 | AAA | AA08 | 89 | 0.15 |
| 03 | 1mhk_S_A3_U4 | AAA | AA00 | 77 | 0.18 |
| 04 | 1mhk_S_U4_G5 | AAw | AA10 | 57 | 0.38 |
| 05 | 1mhk_S_G5_C6 | AAA | AA08 | 78 | 0.23 |
| 06 | 1mhk_S_C6_G7 | AAA | AA00 | 22 | 0.46 |
| 07 | 1mhk_S_G7_A8 | NAN | NANT | 0 | 0.63 |
| 08 | 1mhk_S_A8_A9 | NAN | NANT | 0 | 1.25 |
| 09 | 1mhk_S_A9_C10 | AAA | AA08 | 94 | 0.19 |
| 10 | 1mhk_S_C10_C11 | AAA | AA00 | 46 | 0.33 |
| 11 | 1mhk_S_C11_G12 | NAN | NANT | 0 | 0.80 |
| 12 | 1mhk_L_C1_G2 | AAw | AA01 | 45 | 0.27 |
| 13 | 1mhk_L_G2_A3 | AAw | AA01 | 60 | 0.23 |
| 14 | 1mhk_L_A3_U4 | AAA | AA08 | 96 | 0.17 |
| 15 | 1mhk_L_U4_C5 | AAA | AA00 | 95 | 0.12 |
| 16 | 1mhk_L_C5_C6 | AAA | AA00 | 84 | 0.26 |
| 17 | 1mhk_L_C6_U7 | AAu | AA12 | 80 | 0.15 |
| 18 | 1mhk_L_U7_A8 | AAA | AA00 | 80 | 0.25 |
| 19 | 1mhk_L_A8_G9 | AAw | AA05 | 87 | 0.21 |
| 20 | 1mhk_L_G9_U10 | AAA | AA08 | 96 | 0.19 |
| 21 | 1mhk_L_U10_G11 | AAu | AA12 | 72 | 0.25 |
| 22 | 1mhk_L_G11_U12 | AAA | AA00 | 77 | 0.24 |
| 23 | 1mhk_L_U12_G13 | AAw | AA01 | 68 | 0.25 |
| 24 | 1mhk_L_G13_G14 | AAA | AA08 | 63 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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