Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1mhd_C_DC1001_DA1002 | BBB | BB00 | 39 | 0.40 |
| 02 | 1mhd_C_DA1002_DG1003 | B12 | BB04 | 74 | 0.17 |
| 03 | 1mhd_C_DG1003_DT1004 | BBB | BB00 | 67 | 0.32 |
| 04 | 1mhd_C_DT1004_DC1005 | BBB | BB00 | 41 | 0.29 |
| 05 | 1mhd_C_DC1005_DT1006 | BBB | BB00 | 53 | 0.25 |
| 06 | 1mhd_C_DT1006_DA1007 | BB2 | BB07 | 64 | 0.38 |
| 07 | 1mhd_C_DA1007_DG1008 | BBB | BB00 | 53 | 0.26 |
| 08 | 1mhd_C_DG1008_DA1009 | B12 | BB04 | 63 | 0.22 |
| 09 | 1mhd_C_DA1009_DC1010 | NAN | NANT | 0 | 0.42 |
| 10 | 1mhd_C_DC1010_DA1011 | BBB | BB00 | 39 | 0.55 |
| 11 | 1mhd_C_DA1011_DT1012 | NAN | NANT | 0 | 0.73 |
| 12 | 1mhd_C_DT1012_DA1013 | BBB | BB00 | 21 | 0.53 |
| 13 | 1mhd_D_DT2001_DA2002 | NAN | NANT | 0 | 0.69 |
| 14 | 1mhd_D_DA2002_DT2003 | BBB | BB00 | 72 | 0.28 |
| 15 | 1mhd_D_DT2003_DG2004 | BB2 | BB07 | 50 | 0.22 |
| 16 | 1mhd_D_DG2004_DT2005 | BBB | BB00 | 51 | 0.36 |
| 17 | 1mhd_D_DT2005_DC2006 | BBB | BB00 | 55 | 0.12 |
| 18 | 1mhd_D_DC2006_DT2007 | BBB | BB00 | 81 | 0.19 |
| 19 | 1mhd_D_DT2007_DA2008 | BB2 | BB07 | 67 | 0.39 |
| 20 | 1mhd_D_DA2008_DG2009 | BBB | BB00 | 60 | 0.23 |
| 21 | 1mhd_D_DG2009_DA2010 | BBB | BB00 | 72 | 0.20 |
| 22 | 1mhd_D_DA2010_DC2011 | BBB | BB00 | 71 | 0.20 |
| 23 | 1mhd_D_DC2011_DT2012 | BBB | BB00 | 93 | 0.21 |
| 24 | 1mhd_D_DT2012_DG2013 | NAN | NANT | 0 | 0.71 |
| 25 | 1mhd_D_DG2013_DA2014 | NAN | NANT | 0 | 0.86 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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