Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle

Results of the assignment of 127 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011mfq_A_G112_A113AAAAA00650.20 AA00
0021mfq_A_A113_C114AAwAA01790.21 AA01
0031mfq_A_C114_A115AAwAA01300.36 AA01
0041mfq_A_A115_C116AAAAA08720.27 AA08
0051mfq_A_C116_U117AAAAA00890.19 AA00
0061mfq_A_U117_A118AAAAA00860.17 AA00
0071mfq_A_A118_A119AAAAA00550.47 AA00
0081mfq_A_A119_G120AAAAA00430.38 AA00
0091mfq_A_G120_U121AAAAA00390.33 AA00
0101mfq_A_U121_U122AAAAA08740.26 AA08
0111mfq_A_U122_C123AAAAA08720.33 AA08
0121mfq_A_C123_G124AAwAA01720.23 AA01
0131mfq_A_G124_G125AAAAA00720.25 AA00
0141mfq_A_G125_C126AAAAA00890.11 AA00
0151mfq_A_C126_A127AAAAA00710.31 AA00
0161mfq_A_A127_U128NANNANT00.87 IC03
0171mfq_A_U128_C129NANNANT01.22 IC07
0181mfq_A_C129_A130AAAAA00710.37 AA00
0191mfq_A_A130_A131AAAAA08720.27 AA08
0201mfq_A_A131_U132AAwAA01750.27 AA01
0211mfq_A_U132_A133AAAAA08240.40 AA08
0221mfq_A_A133_U134AAAAA00790.17 AA00
0231mfq_A_U134_G135AAAAA00850.20 AA00
0241mfq_A_G135_G136AAwAA01900.20 AA01
0251mfq_A_G136_U137AAAAA08810.20 AA08
0261mfq_A_U137_G138AAAAA00820.24 AA00
0271mfq_A_G138_A139AAAAA00850.13 AA00
0281mfq_A_A139_C140AAAAA00710.14 AA00
0291mfq_A_C140_C141AAAAA00760.21 AA00
0301mfq_A_C141_U142AAAAA00730.20 AA00
0311mfq_A_U142_C143AAwAA01610.33 AA01
0321mfq_A_C143_C144NANNANT00.45 AA10
0331mfq_A_C144_C145AAAAA08350.31 AA08
0341mfq_A_C145_G146AAAAA00890.18 AA00
0351mfq_A_G146_G147AAAAA08940.13 AA08
0361mfq_A_G147_G148OPNOP03500.27 OP03
0371mfq_A_G148_A149AAwAA01560.38 AA01
0381mfq_A_A149_G150AAAAA00530.39 AA00
0391mfq_A_G150_C151NANNANT00.63 AA05
0401mfq_A_C151_G152AAAAA00600.24 AA00
0411mfq_A_G152_G153AAAAA00830.22 AA00
0421mfq_A_G153_G154AAAAA00740.22 AA00
0431mfq_A_G154_G155AAAAA00160.47 AA00
0441mfq_A_G155_G156AAwAA01450.27 AA01
0451mfq_A_G156_A157AAAAA08170.34 AA08
0461mfq_A_A157_C158AAAAA00770.17 AA00
0471mfq_A_C158_C159AAAAA00810.12 AA00
0481mfq_A_C159_A160AAAAA00850.14 AA00
0491mfq_A_A160_C161AAAAA00600.22 AA00
0501mfq_A_C161_C162AAAAA00730.20 AA00
0511mfq_A_C162_A163AAAAA00450.26 AA00
0521mfq_A_A163_G164AAwAA11350.41 AA11
0531mfq_A_G164_G165AAAAA00100.47 AA00
0541mfq_A_G165_U166AAwAA01350.35 AA01
0551mfq_A_U166_U167AAAAA08690.44 AA08
0561mfq_A_U167_G168AAwAA06390.44 AA06
0571mfq_A_G168_C169NANNANT01.61 OP01
0581mfq_A_C169_C170NANNANT01.74 OP24
0591mfq_A_C170_U171AAwAA11120.62 AA11
0601mfq_A_U171_A172NANNANT00.58 OP04
0611mfq_A_A172_A173NANNANT00.69 AA10
0621mfq_A_A173_G174NANNANT00.69 AA05
0631mfq_A_G174_G175OPNOP01370.43 OP01
0641mfq_A_G175_A176NANNANT01.83 OP01
0651mfq_A_A176_G177NANNANT00.99 OP06
0661mfq_A_G177_G178AAAAA00760.16 AA00
0671mfq_A_G178_G179AAwAA10700.24 AA10
0681mfq_A_G179_G180AAAAA08790.29 AA08
0691mfq_A_G180_U181AAAAA08960.14 AA08
0701mfq_A_U181_G182AAAAA00410.42 AA00
0711mfq_A_G182_A183NANNANT01.31 OP24
0721mfq_A_A183_A184NANNANT00.56 OP05
0731mfq_A_A184_C185AAAAA08620.26 AA08
0741mfq_A_C185_C186AAAAA08380.55 AA08
0751mfq_A_C186_G187NANNANT01.86 OP10
0761mfq_A_G187_G188AAAAA00790.17 AA00
0771mfq_A_G188_C189AAwAA01740.20 AA01
0781mfq_A_C189_C190AAAAA08460.32 AA08
0791mfq_A_C190_C191AAwAA10500.44 AA10
0801mfq_A_C191_A192AAuAA13560.34 AA13
0811mfq_A_A192_G193AAAAA00210.55 AA00
0821mfq_A_G193_G194AAAAA08630.39 AA08
0831mfq_A_G194_U195AAAAA00600.31 AA00
0841mfq_A_U195_C196AAAAA00940.13 AA00
0851mfq_A_C196_G197AAAAA00230.28 AA00
0861mfq_A_G197_G198AAAAA00770.28 AA00
0871mfq_A_G198_A199OPNOP03900.21 OP03
0881mfq_A_A199_A200AAAAA00410.46 AA00
0891mfq_A_A200_A201AAAAA00260.37 AA00
0901mfq_A_A201_C202AAwAA05840.19 AA05
0911mfq_A_C202_G203AAAAA00780.23 AA00
0921mfq_A_G203_G204AAAAA00800.24 AA00
0931mfq_A_G204_A205AAAAA00800.18 AA00
0941mfq_A_A205_G206AAAAA08870.38 AA08
0951mfq_A_G206_C207AAuAA12840.39 AA12
0961mfq_A_C207_A208AAAAA00640.33 AA00
0971mfq_A_A208_G209AAAAA00180.48 AA00
0981mfq_A_G209_G210AAAAA00770.17 AA00
0991mfq_A_G210_U211AAAAA08790.30 AA08
1001mfq_A_U211_C212AAAAA00490.32 AA00
1011mfq_A_C212_A213NANNANT01.92 OP06
1021mfq_A_A213_A214NANNANT00.59 AA11
1031mfq_A_A214_A215NANNANT00.51 OP30
1041mfq_A_A215_A216AAAAA00120.54 AA00
1051mfq_A_A216_C217AAAAA00880.21 AA00
1061mfq_A_C217_U218AAwAA01620.26 AA01
1071mfq_A_U218_C219AAwAA06330.38 AA06
1081mfq_A_C219_C220AAAAA08880.22 AA08
1091mfq_A_C220_C221NANNANT00.97 AA11
1101mfq_A_C221_G222AAwAA05620.36 AA05
1111mfq_A_G222_U223AAAAA08830.30 AA08
1121mfq_A_U223_G224NANNANT00.82 IC03
1131mfq_A_G224_C225AAwAA01540.32 AA01
1141mfq_A_C225_U226AAAAA0090.59 AA00
1151mfq_A_U226_G227NANNANT00.62 AA06
1161mfq_A_G227_A228AAAAA08850.37 AA08
1171mfq_A_A228_U229AAAAA00750.18 AA00
1181mfq_A_U229_C230AAAAA08850.23 AA08
1191mfq_A_C230_A231AAAAA00490.24 AA00
1201mfq_A_A231_G232NANNANT00.87 AA10
1211mfq_A_G232_U233OPNOP08220.32 OP08
1221mfq_A_U233_A234NANNANT01.00 AB04
1231mfq_A_A234_G235AAwAA01730.28 AA01
1241mfq_A_G235_U236AAAAA00610.25 AA00
1251mfq_A_U236_G237AAAAA00840.18 AA00
1261mfq_A_G237_U238AAAAA00860.22 AA00
1271mfq_A_U238_CCC239AAAAA00430.26 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N