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Conformers: ABBIImiBZICOPNSYNN
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Chimeric hairpin with 2',5'-linked RNA loop and RNA stem

Results of the assignment of 60 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011me1-m10_A_G1_G2AAAAA00380.28 AA00
021me1-m1_A_G1_G2AAAAA00540.22 AA00
031me1-m2_A_G1_G2AAAAA00420.26 AA00
041me1-m3_A_G1_G2AAAAA00700.33 AA00
051me1-m4_A_G1_G2AAAAA00670.33 AA00
061me1-m5_A_G1_G2AAAAA00480.24 AA00
071me1-m6_A_G1_G2AAAAA00750.32 AA00
081me1-m7_A_G1_G2AAAAA00510.25 AA00
091me1-m8_A_G1_G2AAAAA00690.25 AA00
101me1-m9_A_G1_G2AAAAA00310.32 AA00
111me1-m10_A_G2_A3AAAAA00160.34 AA00
121me1-m1_A_G2_A3AAAAA04470.46 AA04
131me1-m2_A_G2_A3AAAAA04410.52 AA04
141me1-m3_A_G2_A3AAAAA00140.43 AA00
151me1-m4_A_G2_A3AAuAA12300.38 AA12
161me1-m5_A_G2_A3AAAAA04470.46 AA04
171me1-m6_A_G2_A3AAAAA00150.43 AA00
181me1-m7_A_G2_A3AAAAA04450.46 AA04
191me1-m8_A_G2_A3AAAAA00230.35 AA00
201me1-m9_A_G2_A3AAAAA04350.56 AA04
211me1-m10_A_A3_C4AAAAA00400.48 AA00
221me1-m1_A_A3_C4AAAAA00450.44 AA00
231me1-m2_A_A3_C4AAAAA00640.41 AA00
241me1-m3_A_A3_C4AAAAA00450.46 AA00
251me1-m4_A_A3_C4AAAAA00550.44 AA00
261me1-m5_A_A3_C4AAAAA00390.45 AA00
271me1-m6_A_A3_C4AAAAA00440.46 AA00
281me1-m7_A_A3_C4AAAAA00540.43 AA00
291me1-m8_A_A3_C4AAAAA00470.47 AA00
301me1-m9_A_A3_C4AAAAA00580.41 AA00
311me1-m10_A_G9_U10AAAAA00190.32 AA00
321me1-m1_A_G9_U10AAAAA00130.36 AA00
331me1-m2_A_G9_U10AAAAA00130.38 AA00
341me1-m3_A_G9_U10AAAAA00300.34 AA00
351me1-m4_A_G9_U10AAAAA00100.39 AA00
361me1-m5_A_G9_U10AAAAA00170.35 AA00
371me1-m6_A_G9_U10AAAAA00290.34 AA00
381me1-m7_A_G9_U10AAAAA00400.32 AA00
391me1-m8_A_G9_U10AAAAA00180.37 AA00
401me1-m9_A_G9_U10AAAAA00150.38 AA00
411me1-m10_A_U10_C11AAAAA08360.36 AA08
421me1-m1_A_U10_C11AAAAA08450.41 AA08
431me1-m2_A_U10_C11AAAAA08400.41 AA08
441me1-m3_A_U10_C11AAAAA08350.38 AA08
451me1-m4_A_U10_C11AAAAA08530.35 AA08
461me1-m5_A_U10_C11AAAAA08480.41 AA08
471me1-m6_A_U10_C11AAAAA00300.42 AA00
481me1-m7_A_U10_C11AAAAA08470.38 AA08
491me1-m8_A_U10_C11AAAAA08370.37 AA08
501me1-m9_A_U10_C11AAAAA08370.42 AA08
511me1-m10_A_C11_C12AAAAA00590.25 AA00
521me1-m1_A_C11_C12AAAAA00650.20 AA00
531me1-m2_A_C11_C12AAAAA00730.20 AA00
541me1-m3_A_C11_C12AAAAA00530.24 AA00
551me1-m4_A_C11_C12AAAAA00620.28 AA00
561me1-m5_A_C11_C12AAAAA00720.23 AA00
571me1-m6_A_C11_C12AAAAA00500.26 AA00
581me1-m7_A_C11_C12AAAAA00650.23 AA00
591me1-m8_A_C11_C12AAAAA00620.23 AA00
601me1-m9_A_C11_C12AAAAA00770.23 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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