Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1m8y_C_A11_U12 | NAN | NANT | 0 | 1.79 |
| 02 | 1m8y_C_U12_U13 | NAN | NANT | 0 | 1.54 |
| 03 | 1m8y_C_U13_G14 | NAN | NANT | 0 | 0.52 |
| 04 | 1m8y_C_G14_U15 | ICL | IC07 | 90 | 0.11 |
| 05 | 1m8y_C_U15_A16 | AAu | AA12 | 42 | 0.54 |
| 06 | 1m8y_C_A16_C17 | ICL | IC07 | 38 | 0.41 |
| 07 | 1m8y_C_C17_A18 | AAu | AA07 | 75 | 0.36 |
| 08 | 1m8y_C_A18_U19 | NAN | NANT | 0 | 0.53 |
| 09 | 1m8y_C_U19_A20 | NAN | NANT | 0 | 0.61 |
| 10 | 1m8y_D_A11_U12 | NAN | NANT | 0 | 1.67 |
| 11 | 1m8y_D_U12_U13 | NAN | NANT | 0 | 1.29 |
| 12 | 1m8y_D_U13_G14 | AAu | AA12 | 44 | 0.48 |
| 13 | 1m8y_D_G14_U15 | ICL | IC07 | 60 | 0.10 |
| 14 | 1m8y_D_U15_A16 | NAN | NANT | 0 | 0.57 |
| 15 | 1m8y_D_A16_C17 | NAN | NANT | 0 | 0.56 |
| 16 | 1m8y_D_C17_A18 | AAu | AA07 | 81 | 0.38 |
| 17 | 1m8y_D_A18_U19 | NAN | NANT | 0 | 0.54 |
| 18 | 1m8y_D_U19_A20 | NAN | NANT | 0 | 0.97 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|