DNATCO v4.1: results

Transition State Stabilization by a Catalytic RNA

Results of the assignment of 218 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1m5p_A_G1_G2	AAw	AA10	17	0.32	AA10
002	1m5p_A_G2_C3	AAA	AA00	12	0.51	AA00
003	1m5p_A_C3_C4	AAu	AA12	23	0.44	AA12
004	1m5p_A_C4_A5	AAA	AA00	52	0.23	AA00
005	1m5p_A_A5_C6	AAA	AA08	94	0.13	AA08
006	1m5p_A_C6_C7	AAA	AA00	75	0.22	AA00
007	1m5p_A_C7_U8	AAA	AA08	94	0.20	AA08
008	1m5p_A_U8_G9	AAA	AA00	90	0.14	AA00
009	1m5p_A_G9_A10	AAA	AA00	89	0.18	AA00
010	1m5p_A_A10_C11	AAA	AA00	88	0.25	AA00
011	1m5p_A_C11_A12	A-B	AB05	48	0.49	AB05
012	1m5p_M_U14_C15	AAA	AA00	36	0.38	AA00
013	1m5p_M_C15_C16	AAA	AA00	73	0.20	AA00
014	1m5p_M_C16_U17	AAA	AA00	74	0.16	AA00
015	1m5p_M_U17_C18	AAA	AA00	79	0.16	AA00
016	1m5p_M_C18_U19	AAA	AA00	86	0.12	AA00
017	1m5p_M_U19_C20	AAA	AA00	92	0.15	AA00
018	1m5p_M_C20_C21	AAA	AA00	75	0.17	AA00
019	1m5p_B_G1_G2	AAA	AA00	11	0.27	AA00
020	1m5p_B_G2_A3	AAA	AA00	42	0.23	AA00
021	1m5p_B_A3_G4	AAw	AA01	76	0.21	AA01
022	1m5p_B_G4_A5	AAA	AA00	50	0.32	AA00
023	1m5p_B_A5_G6	AAA	AA00	68	0.18	AA00
024	1m5p_B_G6_A7	AAA	AA08	53	0.38	AA08
025	1m5p_B_A7_G8	AAw	AA05	60	0.44	AA05
026	1m5p_B_G8_A9	AAu	AA07	70	0.46	AA07
027	1m5p_B_A9_A10	AAA	AA08	90	0.20	AA08
028	1m5p_B_A10_G11	AAA	AA08	81	0.25	AA08
029	1m5p_B_G11_U12	AAA	AA00	84	0.22	AA00
030	1m5p_B_U12_C13	AAA	AA00	89	0.26	AA00
031	1m5p_B_C13_A14	NAN	NANT	0	0.58	AB03
032	1m5p_B_A14_A15	NAN	NANT	0	1.61	OP17
033	1m5p_B_A15_C16	NAN	NANT	0	0.52	AA04
034	1m5p_B_C16_C17	AAA	AA00	57	0.30	AA00
035	1m5p_B_C17_A18	AAA	AA00	86	0.17	AA00
036	1m5p_B_A18_G19	AAA	AA00	89	0.15	AA00
037	1m5p_B_G19_A20	AAw	AA01	35	0.36	AA01
038	1m5p_B_A20_G21	AAA	AA08	63	0.39	AA08
039	1m5p_B_G21_A22	NAN	NANT	0	0.48	OP08
040	1m5p_B_A22_A23	AAA	AA08	72	0.29	AA08
041	1m5p_B_A23_A24	AAA	AA00	75	0.26	AA00
042	1m5p_B_A24_C25	AAA	AA00	72	0.24	AA00
043	1m5p_B_C25_A26	AAA	AA00	83	0.16	AA00
044	1m5p_B_A26_C27	AAA	AA00	88	0.18	AA00
045	1m5p_B_C27_A28	AAA	AA00	61	0.20	AA00
046	1m5p_B_A28_C29	AAA	AA00	95	0.10	AA00
047	1m5p_B_C29_C30	AAA	AA00	64	0.20	AA00
048	1m5p_B_C30_A31	AAA	AA00	71	0.19	AA00
049	1m5p_B_A31_A32	AAA	AA00	60	0.19	AA00
050	1m5p_B_A32_C33	AAw	AA01	57	0.33	AA01
051	1m5p_B_C33_C34	AAA	AA08	89	0.17	AA08
052	1m5p_B_C34_C35	AAA	AA00	79	0.21	AA00
053	1m5p_B_C35_A36	AAA	AA00	78	0.29	AA00
054	1m5p_B_A36_U37	AAA	AA00	45	0.24	AA00
055	1m5p_B_U37_U38	ICL	IC02	91	0.11	IC02
056	1m5p_B_U38_G39	ZZZ	ZZ02	53	0.52	ZZ02
057	1m5p_B_G39_C40	NAN	NANT	0	0.77	IC02
058	1m5p_B_C40_A41	NAN	NANT	0	0.65	OP15
059	1m5p_B_A41_C42	AAA	AA00	94	0.16	AA00
060	1m5p_B_C42_U43	NAN	NANT	0	0.94	OP30
061	1m5p_B_U43_C44	AAu	AA12	25	0.61	AA12
062	1m5p_B_C44_C45	AAA	AA00	63	0.35	AA00
063	1m5p_B_C45_G46	NAN	NANT	0	1.49	OP17
064	1m5p_B_G46_G47	AAA	AA00	65	0.12	AA00
065	1m5p_B_G47_G48	AAA	AA00	92	0.19	AA00
066	1m5p_B_G48_U49	AAA	AA00	66	0.23	AA00
067	1m5p_B_U49_U50	AAw	AA01	14	0.29	AA01
068	1m5p_B_U50_G51	AAA	AA08	95	0.16	AA08
069	1m5p_B_G51_G52	AAA	AA08	80	0.24	AA08
070	1m5p_B_G52_U53	AAA	AA00	78	0.09	AA00
071	1m5p_B_U53_G54	AAA	AA00	94	0.21	AA00
072	1m5p_B_G54_G55	A-B	AB05	67	0.40	AB05
073	1m5p_B_G55_U56	NAN	NANT	0	0.58	OP13
074	1m5p_B_U56_A57	NAN	NANT	0	0.82	OP21
075	1m5p_B_A57_U58	NAN	NANT	0	1.66	OP09
076	1m5p_B_U58_A59	OPN	OP11	79	0.15	OP11
077	1m5p_B_A59_U60	AAw	AA05	48	0.37	AA05
078	1m5p_B_U60_U61	NAN	NANT	0	1.29	AA11
079	1m5p_B_U61_A62	NAN	NANT	0	0.81	AA03
080	1m5p_B_A62_C63	AAA	AA08	39	0.46	AA08
081	1m5p_B_C63_C64	AAA	AA00	81	0.20	AA00
082	1m5p_B_C64_U65	AAA	AA00	80	0.15	AA00
083	1m5p_B_U65_G66	AAw	AA01	82	0.23	AA01
084	1m5p_B_G66_G67	AAw	AA11	94	0.22	AA11
085	1m5p_B_G67_U68	AAA	AA00	39	0.29	AA00
086	1m5p_B_U68_A69	AAA	AA08	72	0.28	AA08
087	1m5p_B_A69_C70	AAw	AA01	54	0.32	AA01
088	1m5p_B_C70_G71	AAA	AA08	38	0.30	AA08
089	1m5p_B_G71_G72	AAA	AA00	16	0.43	AA00
090	1m5p_B_G72_G73	NAN	NANT	0	0.65	BB2S
091	1m5p_B_G73_G74	NAN	NANT	0	0.30	AAS1
092	1m5p_B_G74_G75	AAA	AA00	74	0.31	AA00
093	1m5p_B_G75_A76	NAN	NANT	0	2.29	IC01
094	1m5p_B_A76_A77	SYN	AAS1	37	0.47	AAS1
095	1m5p_B_A77_A78	AAA	AA00	45	0.22	AA00
096	1m5p_B_A78_C79	NAN	NANT	0	1.03	AA08
097	1m5p_B_C79_U80	AAA	AA00	66	0.20	AA00
098	1m5p_B_U80_U81	AAw	AA06	89	0.19	AA06
099	1m5p_B_U81_C82	AAw	AA06	68	0.41	AA06
100	1m5p_B_C82_G83	AAA	AA08	35	0.29	AA08
101	1m5p_B_G83_U84	AAw	AA06	48	0.37	AA06
102	1m5p_B_U84_G85	NAN	NANT	0	1.40	OP17
103	1m5p_B_G85_G86	AAA	AA08	41	0.30	AA08
104	1m5p_B_G86_U87	AAA	AA00	18	0.37	AA00
105	1m5p_B_U87_G88	AAA	AA00	78	0.18	AA00
106	1m5p_B_G88_G89	AAA	AA00	71	0.24	AA00
107	1m5p_B_G89_C90	AAA	AA00	93	0.16	AA00
108	1m5p_B_C90_C91	AAw	AA01	66	0.27	AA01
109	1m5p_B_C91_G92	NAN	NANT	0	1.61	OP17
110	1m5p_D_G1_G2	AAw	AA06	50	0.33	AA06
111	1m5p_D_G2_C3	AAA	AA08	64	0.36	AA08
112	1m5p_D_C3_C4	AAA	AA08	61	0.41	AA08
113	1m5p_D_C4_A5	AAA	AA00	86	0.12	AA00
114	1m5p_D_A5_C6	AAA	AA08	89	0.23	AA08
115	1m5p_D_C6_C7	AAA	AA00	82	0.30	AA00
116	1m5p_D_C7_U8	AAA	AA00	87	0.19	AA00
117	1m5p_D_U8_G9	AAA	AA00	89	0.13	AA00
118	1m5p_D_G9_A10	AAA	AA00	79	0.20	AA00
119	1m5p_D_A10_C11	AAA	AA00	78	0.27	AA00
120	1m5p_D_C11_A12	A-B	AB05	30	0.47	AB05
121	1m5p_P_U14_C15	AAA	AA00	49	0.40	AA00
122	1m5p_P_C15_C16	AAw	AA01	65	0.31	AA01
123	1m5p_P_C16_U17	AAA	AA08	81	0.25	AA08
124	1m5p_P_U17_C18	AAA	AA08	88	0.15	AA08
125	1m5p_P_C18_U19	AAA	AA00	65	0.20	AA00
126	1m5p_P_U19_C20	AAA	AA00	86	0.14	AA00
127	1m5p_P_C20_C21	AAA	AA00	35	0.31	AA00
128	1m5p_E_G1_G2	AAA	AA08	8	0.43	AA08
129	1m5p_E_G2_A3	AAA	AA00	96	0.09	AA00
130	1m5p_E_A3_G4	AAA	AA00	88	0.20	AA00
131	1m5p_E_G4_A5	AAA	AA00	88	0.16	AA00
132	1m5p_E_A5_G6	AAw	AA01	78	0.33	AA01
133	1m5p_E_G6_A7	AAA	AA08	84	0.29	AA08
134	1m5p_E_A7_G8	AAA	AA00	26	0.48	AA00
135	1m5p_E_G8_A9	AAu	AA12	88	0.35	AA12
136	1m5p_E_A9_A10	AAA	AA08	88	0.23	AA08
137	1m5p_E_A10_G11	AAA	AA08	78	0.22	AA08
138	1m5p_E_G11_U12	AAA	AA00	83	0.19	AA00
139	1m5p_E_U12_C13	AAA	AA00	87	0.22	AA00
140	1m5p_E_C13_A14	NAN	NANT	0	0.48	AB04
141	1m5p_E_A14_A15	NAN	NANT	0	2.43	OP01
142	1m5p_E_A15_C16	AAA	AA00	78	0.20	AA00
143	1m5p_E_C16_C17	AAA	AA00	85	0.19	AA00
144	1m5p_E_C17_A18	AAA	AA00	88	0.16	AA00
145	1m5p_E_A18_G19	AAA	AA00	87	0.20	AA00
146	1m5p_E_G19_A20	AAA	AA00	64	0.29	AA00
147	1m5p_E_A20_G21	AAA	AA00	60	0.37	AA00
148	1m5p_E_G21_A22	NAN	NANT	0	0.46	OP08
149	1m5p_E_A22_A23	AAA	AA00	37	0.38	AA00
150	1m5p_E_A23_A24	AAA	AA00	82	0.23	AA00
151	1m5p_E_A24_C25	AAA	AA00	75	0.32	AA00
152	1m5p_E_C25_A26	AAw	AA01	39	0.29	AA01
153	1m5p_E_A26_C27	AAA	AA08	83	0.30	AA08
154	1m5p_E_C27_A28	AAA	AA00	42	0.23	AA00
155	1m5p_E_A28_C29	AAA	AA00	81	0.20	AA00
156	1m5p_E_C29_C30	AAA	AA00	95	0.13	AA00
157	1m5p_E_C30_A31	AAA	AA00	91	0.16	AA00
158	1m5p_E_A31_A32	AAA	AA00	79	0.15	AA00
159	1m5p_E_A32_C33	AAA	AA00	73	0.15	AA00
160	1m5p_E_C33_C34	AAA	AA00	90	0.10	AA00
161	1m5p_E_C34_C35	AAA	AA00	82	0.17	AA00
162	1m5p_E_C35_A36	AAA	AA00	47	0.27	AA00
163	1m5p_E_A36_U37	AAA	AA04	79	0.22	AA04
164	1m5p_E_U37_U38	ICL	IC02	81	0.09	IC02
165	1m5p_E_U38_G39	ZZZ	ZZ02	27	0.53	ZZ02
166	1m5p_E_G39_C40	NAN	NANT	0	0.68	IC02
167	1m5p_E_C40_A41	NAN	NANT	0	0.69	OP15
168	1m5p_E_A41_C42	NAN	NANT	0	0.36	AA04
169	1m5p_E_C42_U43	NAN	NANT	0	2.14	AA05
170	1m5p_E_U43_C44	NAN	NANT	0	1.04	OP04
171	1m5p_E_C44_C45	AAA	AA08	58	0.32	AA08
172	1m5p_E_C45_G46	NAN	NANT	0	1.47	OP17
173	1m5p_E_G46_G47	AAA	AA00	69	0.15	AA00
174	1m5p_E_G47_G48	AAA	AA00	42	0.25	AA00
175	1m5p_E_G48_U49	AAA	AA00	68	0.23	AA00
176	1m5p_E_U49_U50	AAA	AA00	81	0.20	AA00
177	1m5p_E_U50_G51	AAA	AA00	94	0.15	AA00
178	1m5p_E_G51_G52	AAA	AA00	87	0.14	AA00
179	1m5p_E_G52_U53	AAA	AA00	97	0.08	AA00
180	1m5p_E_U53_G54	AAA	AA00	70	0.18	AA00
181	1m5p_E_G54_G55	NAN	NANT	0	0.48	AB04
182	1m5p_E_G55_U56	NAN	NANT	0	1.82	OP06
183	1m5p_E_U56_A57	NAN	NANT	0	0.86	OP21
184	1m5p_E_A57_U58	NAN	NANT	0	1.64	OP09
185	1m5p_E_U58_A59	OPN	OP11	78	0.20	OP11
186	1m5p_E_A59_U60	NAN	NANT	0	0.42	AB04
187	1m5p_E_U60_U61	NAN	NANT	0	1.43	AB04
188	1m5p_E_U61_A62	NAN	NANT	0	1.46	OP15
189	1m5p_E_A62_C63	AAA	AA00	12	0.54	AA00
190	1m5p_E_C63_C64	AAA	AA00	92	0.20	AA00
191	1m5p_E_C64_U65	AAA	AA00	84	0.17	AA00
192	1m5p_E_U65_G66	AAA	AA00	74	0.20	AA00
193	1m5p_E_G66_G67	AAw	AA06	83	0.14	AA06
194	1m5p_E_G67_U68	A-B	AB04	56	0.36	AB04
195	1m5p_E_U68_A69	NAN	NANT	0	0.36	BA05
196	1m5p_E_A69_C70	AAA	AA00	63	0.22	AA00
197	1m5p_E_C70_G71	AAA	AA00	76	0.16	AA00
198	1m5p_E_G71_G72	AAA	AA08	74	0.30	AA08
199	1m5p_E_G72_G73	AAw	AA01	70	0.33	AA01
200	1m5p_E_G73_G74	AAA	AA00	63	0.34	AA00
201	1m5p_E_G74_G75	AAA	AA08	11	0.57	AA08
202	1m5p_E_G75_A76	NAN	NANT	0	1.15	OP29
203	1m5p_E_A76_A77	NAN	NANT	0	0.80	AA03
204	1m5p_E_A77_A78	NAN	NANT	0	0.62	AA12
205	1m5p_E_A78_C79	NAN	NANT	0	1.58	AA10
206	1m5p_E_C79_U80	AAA	AA08	80	0.30	AA08
207	1m5p_E_U80_U81	AAA	AA00	30	0.39	AA00
208	1m5p_E_U81_C82	AAA	AA00	90	0.15	AA00
209	1m5p_E_C82_G83	AAA	AA00	73	0.36	AA00
210	1m5p_E_G83_U84	AAA	AA08	63	0.27	AA08
211	1m5p_E_U84_G85	NAN	NANT	0	0.89	OP30
212	1m5p_E_G85_G86	AAw	AA01	33	0.43	AA01
213	1m5p_E_G86_U87	AAw	AA11	10	0.62	AA11
214	1m5p_E_U87_G88	AAA	AA00	79	0.29	AA00
215	1m5p_E_G88_G89	AAA	AA00	90	0.16	AA00
216	1m5p_E_G89_C90	AAw	AA06	70	0.31	AA06
217	1m5p_E_C90_C91	NAN	NANT	0	1.04	AA11
218	1m5p_E_C91_G92	AAw	AA01	81	0.18	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 218 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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