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Conformers: ABBIImiBZICOPNSYNN
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DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011lq1_E_DT1_DT2BBBBB00710.25 BB00
021lq1_E_DT2_DC3BBBBB00580.19 BB00
031lq1_E_DC3_DG4BBBBB00550.30 BB00
041lq1_E_DG4_DT5BBBBB00650.24 BB00
051lq1_E_DT5_DG6BBwBB02880.16 BB02
061lq1_E_DG6_DT7miBBB15870.20 BB15
071lq1_E_DT7_DC8NANNANT00.28 BB03
081lq1_E_DC8_DG9BB2BB07540.20 BB07
091lq1_E_DG9_DA10B12BB04550.21 BB04
101lq1_E_DA10_DA11BBBBB00740.16 BB00
111lq1_E_DA11_DT12BBwBB02850.18 BB02
121lq1_E_DT12_DT13BBBBB00690.20 BB00
131lq1_E_DT13_DT14BBwBB02790.20 BB02
141lq1_E_DT14_DT15miBBB15730.32 BB15
151lq1_E_DT15_DG16BBBBB00240.21 BB00
161lq1_F_DA115_DC116NANNANT01.55 OP14
171lq1_F_DC116_DA117BBBBB00760.24 BB00
181lq1_F_DA117_DA118BBBBB00400.29 BB00
191lq1_F_DA118_DA119miBBB13650.32 BB13
201lq1_F_DA119_DA120BBBBB00260.30 BB00
211lq1_F_DA120_DT121BBwBB02910.15 BB02
221lq1_F_DT121_DT122BBBBB00610.32 BB00
231lq1_F_DT122_DC123BBwBB02710.14 BB02
241lq1_F_DC123_DG124BBBBB00550.34 BB00
251lq1_F_DG124_DA125NANNANT00.50 BB02
261lq1_F_DA125_DC126B12BB04270.33 BB04
271lq1_F_DC126_DA127BBBBB00500.37 BB00
281lq1_F_DA127_DC128BBwBB02720.25 BB02
291lq1_F_DC128_DG129BBBBB00210.35 BB00
301lq1_F_DG129_DA130NANNANT00.27 BB07
311lq1_G_DT1_DT2NANNANT01.38 OP18
321lq1_G_DT2_DC3BBwBB02430.36 BB02
331lq1_G_DC3_DG4B12BB04320.29 BB04
341lq1_G_DG4_DT5BBBBB00760.17 BB00
351lq1_G_DT5_DG6BBwBB02830.16 BB02
361lq1_G_DG6_DT7BBwBB02660.30 BB02
371lq1_G_DT7_DC8NANNANT00.46 BB15
381lq1_G_DC8_DG9BB2BB07200.37 BB07
391lq1_G_DG9_DA10B12BB04620.19 BB04
401lq1_G_DA10_DA11BBBBB00690.23 BB00
411lq1_G_DA11_DT12BBwBB02710.29 BB02
421lq1_G_DT12_DT13BBBBB00610.27 BB00
431lq1_G_DT13_DT14BBwBB02810.20 BB02
441lq1_G_DT14_DT15BBBBB00530.23 BB00
451lq1_G_DT15_DG16BBBBB00410.32 BB00
461lq1_H_DA115_DC116BBBBB00720.28 BB00
471lq1_H_DC116_DA117BBBBB00550.29 BB00
481lq1_H_DA117_DA118BBBBB00440.36 BB00
491lq1_H_DA118_DA119miBBB13820.28 BB13
501lq1_H_DA119_DA120BBBBB00290.46 BB00
511lq1_H_DA120_DT121BBwBB02830.21 BB02
521lq1_H_DT121_DT122BBBBB00690.30 BB00
531lq1_H_DT122_DC123BBwBB02840.15 BB02
541lq1_H_DC123_DG124B12BB04590.30 BB04
551lq1_H_DG124_DA125BBwBB02550.34 BB02
561lq1_H_DA125_DC126BBBBB00370.45 BB00
571lq1_H_DC126_DA127BBBBB00550.28 BB00
581lq1_H_DA127_DC128BBwBB02400.26 BB02
591lq1_H_DC128_DG129BB2BB07300.28 BB07
601lq1_H_DG129_DA130BBBBB00450.32 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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