Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1lei_C_DC1_DT2 | NAN | NANT | 0 | 0.59 |
| 02 | 1lei_C_DT2_DC3 | NAN | NANT | 0 | 0.67 |
| 03 | 1lei_C_DC3_DA4 | NAN | NANT | 0 | 0.64 |
| 04 | 1lei_C_DA4_DG5 | BBB | BB00 | 58 | 0.48 |
| 05 | 1lei_C_DG5_DG6 | NAN | NANT | 0 | 0.36 |
| 06 | 1lei_C_DG6_DG7 | B12 | BB04 | 44 | 0.34 |
| 07 | 1lei_C_DG7_DA8 | BBw | BB02 | 84 | 0.21 |
| 08 | 1lei_C_DA8_DA9 | BBB | BB00 | 69 | 0.31 |
| 09 | 1lei_C_DA9_DA10 | B12 | BB04 | 79 | 0.13 |
| 10 | 1lei_C_DA10_DG11 | BBB | BB00 | 71 | 0.18 |
| 11 | 1lei_C_DG11_DT12 | BBB | BB00 | 60 | 0.45 |
| 12 | 1lei_C_DT12_DA13 | BBw | BB02 | 59 | 0.16 |
| 13 | 1lei_C_DA13_DC14 | B12 | BB05 | 31 | 0.36 |
| 14 | 1lei_C_DC14_DA15 | B12 | BB04 | 20 | 0.46 |
| 15 | 1lei_C_DA15_DG16 | BB2 | BB07 | 40 | 0.36 |
| 16 | 1lei_C_DG16_DA17 | BB2 | BB08 | 69 | 0.28 |
| 17 | 1lei_D_DT1_DC2 | NAN | NANT | 0 | 0.62 |
| 18 | 1lei_D_DC2_DT3 | AAw | AA01 | 44 | 0.43 |
| 19 | 1lei_D_DT3_DG4 | AAA | AA00 | 15 | 0.40 |
| 20 | 1lei_D_DG4_5IU5 | NAN | NANT | 0 | 0.43 |
| 21 | 1lei_D_5IU5_DA6 | NAN | NANT | 0 | 0.64 |
| 22 | 1lei_D_DA6_DC7 | AAA | AA08 | 64 | 0.30 |
| 23 | 1lei_D_DC7_5IU8 | AAA | AA00 | 58 | 0.44 |
| 24 | 1lei_D_5IU8_5IU9 | AAA | AA00 | 38 | 0.44 |
| 25 | 1lei_D_5IU9_5IU10 | NAN | NANT | 0 | 0.63 |
| 26 | 1lei_D_5IU10_DC11 | AAw | AA01 | 53 | 0.26 |
| 27 | 1lei_D_DC11_DC12 | NAN | NANT | 0 | 0.67 |
| 28 | 1lei_D_DC12_DC13 | NAN | NANT | 0 | 0.52 |
| 29 | 1lei_D_DC13_DT14 | AAw | AA01 | 23 | 0.30 |
| 30 | 1lei_D_DT14_DG15 | NAN | NANT | 0 | 0.59 |
| 31 | 1lei_D_DG15_DA16 | NAN | NANT | 0 | 0.54 |
| 32 | 1lei_D_DA16_DG17 | AAA | AA00 | 17 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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