Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB siti
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1le9_C_DT701_DG702 | BBB | BB00 | 14 | 0.44 |
| 02 | 1le9_C_DG702_DG703 | NAN | NANT | 0 | 0.53 |
| 03 | 1le9_C_DG703_DG704 | BBw | BB11 | 73 | 0.32 |
| 04 | 1le9_C_DG704_DA705 | BBw | BB16 | 51 | 0.48 |
| 05 | 1le9_C_DA705_DC706 | B12 | BB04 | 67 | 0.27 |
| 06 | 1le9_C_DC706_DT707 | BBB | BB00 | 72 | 0.20 |
| 07 | 1le9_C_DT707_DT708 | BBB | BB00 | 92 | 0.15 |
| 08 | 1le9_C_DT708_DT709 | BBB | BB00 | 82 | 0.32 |
| 09 | 1le9_C_DT709_DC710 | miB | BB10 | 28 | 0.32 |
| 10 | 1le9_C_DC710_DC711 | miB | BB10 | 87 | 0.35 |
| 11 | 1le9_C_DC711_DT712 | miB | BB12 | 58 | 0.28 |
| 12 | 1le9_D_DA713_DA714 | BB2 | BB07 | 54 | 0.49 |
| 13 | 1le9_D_DA714_DG715 | BBB | BB00 | 71 | 0.30 |
| 14 | 1le9_D_DG715_DG716 | B12 | BB04 | 80 | 0.20 |
| 15 | 1le9_D_DG716_DA717 | BBB | BB00 | 87 | 0.17 |
| 16 | 1le9_D_DA717_DA718 | B12 | BB04 | 75 | 0.18 |
| 17 | 1le9_D_DA718_DA719 | BBB | BB00 | 87 | 0.12 |
| 18 | 1le9_D_DA719_DG720 | BBB | BB00 | 85 | 0.16 |
| 19 | 1le9_D_DG720_DT721 | BBB | BB00 | 83 | 0.33 |
| 20 | 1le9_D_DT721_DC722 | BBw | BB02 | 43 | 0.32 |
| 21 | 1le9_D_DC722_DC723 | BBB | BB00 | 46 | 0.33 |
| 22 | 1le9_D_DC723_DC724 | NAN | NANT | 0 | 0.45 |
| 23 | 1le9_G_DT801_DG802 | NAN | NANT | 0 | 1.13 |
| 24 | 1le9_G_DG802_DG803 | NAN | NANT | 0 | 0.68 |
| 25 | 1le9_G_DG803_DG804 | B12 | BB04 | 65 | 0.26 |
| 26 | 1le9_G_DG804_DA805 | BBB | BB00 | 46 | 0.43 |
| 27 | 1le9_G_DA805_DC806 | NAN | NANT | 0 | 0.44 |
| 28 | 1le9_G_DC806_DT807 | NAN | NANT | 0 | 0.56 |
| 29 | 1le9_G_DT807_DT808 | BBB | BB00 | 46 | 0.50 |
| 30 | 1le9_G_DT808_DT809 | B12 | BB04 | 73 | 0.29 |
| 31 | 1le9_G_DT809_DC810 | BBw | BB02 | 42 | 0.31 |
| 32 | 1le9_G_DC810_DC811 | BBw | BB03 | 73 | 0.40 |
| 33 | 1le9_G_DC811_DT812 | NAN | NANT | 0 | 0.96 |
| 34 | 1le9_H_DA813_DA814 | NAN | NANT | 0 | 0.89 |
| 35 | 1le9_H_DA814_DG815 | miB | BB13 | 62 | 0.25 |
| 36 | 1le9_H_DG815_DG816 | BBw | BB03 | 39 | 0.34 |
| 37 | 1le9_H_DG816_DA817 | BBB | BB00 | 35 | 0.51 |
| 38 | 1le9_H_DA817_DA818 | BB2 | BB07 | 49 | 0.34 |
| 39 | 1le9_H_DA818_DA819 | BBB | BB00 | 27 | 0.49 |
| 40 | 1le9_H_DA819_DG820 | B12 | BB04 | 27 | 0.27 |
| 41 | 1le9_H_DG820_DT821 | NAN | NANT | 0 | 0.62 |
| 42 | 1le9_H_DT821_DC822 | NAN | NANT | 0 | 0.58 |
| 43 | 1le9_H_DC822_DC823 | NAN | NANT | 0 | 0.31 |
| 44 | 1le9_H_DC823_DC824 | BBw | BB11 | 61 | 0.53 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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