Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1lb2_K_DA15_DT14 | BBB | BB00 | 82 | 0.25 |
| 02 | 1lb2_K_DG16_DA15 | BB2 | BB07 | 38 | 0.41 |
| 03 | 1lb2_K_DT17_DG16 | NAN | NANT | 0 | 0.85 |
| 04 | 1lb2_K_DG18_DT17 | miB | BB10 | 30 | 0.23 |
| 05 | 1lb2_K_DT19_DG18 | B12 | BB04 | 85 | 0.20 |
| 06 | 1lb2_K_DA20_DT19 | BBB | BB00 | 82 | 0.23 |
| 07 | 1lb2_K_DA21_DA20 | BBB | BB00 | 88 | 0.20 |
| 08 | 1lb2_K_DA22_DA21 | BBB | BB00 | 91 | 0.21 |
| 09 | 1lb2_K_DA23_DA22 | BBB | BB00 | 88 | 0.14 |
| 10 | 1lb2_K_DT24_DA23 | BB2 | BB07 | 89 | 0.25 |
| 11 | 1lb2_K_DC25_DT24 | B12 | BB04 | 83 | 0.25 |
| 12 | 1lb2_K_DC26_DC25 | BBB | BB00 | 85 | 0.20 |
| 13 | 1lb2_K_DT27_DC26 | BBB | BB00 | 42 | 0.26 |
| 14 | 1lb2_K_DT28_DT27 | BBB | BB00 | 76 | 0.26 |
| 15 | 1lb2_K_DT29_DT28 | BBw | BB02 | 48 | 0.19 |
| 16 | 1lb2_K_DT30_DT29 | BBB | BB00 | 66 | 0.28 |
| 17 | 1lb2_K_DT31_DT30 | BBB | BB00 | 58 | 0.26 |
| 18 | 1lb2_K_DT32_DT31 | BBw | BB02 | 76 | 0.22 |
| 19 | 1lb2_K_DC33_DT32 | BBB | BB00 | 54 | 0.32 |
| 20 | 1lb2_J_DC10_DT11 | BBB | BB00 | 87 | 0.25 |
| 21 | 1lb2_J_DT11_DA12 | BBB | BB00 | 79 | 0.28 |
| 22 | 1lb2_J_DA12_DG13 | BBw | BB02 | 72 | 0.28 |
| 23 | 1lb2_J_DG13_DA14 | BBB | BB00 | 56 | 0.32 |
| 24 | 1lb2_J_DA14_DT15 | BBw | BB02 | 53 | 0.26 |
| 25 | 1lb2_J_DT15_DC16 | NAN | NANT | 0 | 0.48 |
| 26 | 1lb2_J_DC16_DA17 | B12 | BB04 | 17 | 0.41 |
| 27 | 1lb2_J_DA17_DC18 | BBB | BB00 | 69 | 0.20 |
| 28 | 1lb2_J_DC18_DA19 | BB2 | BB07 | 72 | 0.24 |
| 29 | 1lb2_J_DA19_DT20 | BBB | BB00 | 81 | 0.26 |
| 30 | 1lb2_J_DT20_DT21 | BBB | BB00 | 87 | 0.32 |
| 31 | 1lb2_J_DT21_DT22 | BBB | BB00 | 88 | 0.23 |
| 32 | 1lb2_J_DT22_DT23 | BBB | BB00 | 83 | 0.25 |
| 33 | 1lb2_J_DT23_DA24 | BBB | BB00 | 53 | 0.31 |
| 34 | 1lb2_J_DA24_DG25 | BBB | BB00 | 65 | 0.41 |
| 35 | 1lb2_J_DG25_DG26 | BB2 | BB07 | 67 | 0.23 |
| 36 | 1lb2_J_DG26_DA27 | BB2 | BB07 | 71 | 0.28 |
| 37 | 1lb2_J_DA27_DA28 | BBB | BB00 | 74 | 0.24 |
| 38 | 1lb2_J_DA28_DA29 | BB2 | BB07 | 83 | 0.20 |
| 39 | 1lb2_J_DA29_DA30 | BBB | BB00 | 92 | 0.16 |
| 40 | 1lb2_J_DA30_DA31 | B12 | BB05 | 82 | 0.29 |
| 41 | 1lb2_J_DA31_DA32 | BBB | BB00 | 50 | 0.28 |
| 42 | 1lb2_J_DA32_DG33 | BBB | BB00 | 64 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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