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Conformers: ABBIImiBZICOPNSYNN
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X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution

Results of the assignment of 292 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011kx5_I_DA-73_DT-72BBBBB00700.29 BB00
0021kx5_I_DT-72_DC-71BBBBB00940.11 BB00
0031kx5_I_DC-71_DA-70BBBBB00930.16 BB00
0041kx5_I_DA-70_DA-69B12BB04920.13 BB04
0051kx5_I_DA-69_DT-68BBwBB02940.11 BB02
0061kx5_I_DT-68_DA-67BBBBB00620.35 BB00
0071kx5_I_DA-67_DT-66BBBBB00820.18 BB00
0081kx5_I_DT-66_DC-65BBBBB00660.24 BB00
0091kx5_I_DC-65_DC-64BBBBB00820.19 BB00
0101kx5_I_DC-64_DA-63B12BB04750.17 BB04
0111kx5_I_DA-63_DC-62BBBBB00860.20 BB00
0121kx5_I_DC-62_DC-61BBBBB00830.23 BB00
0131kx5_I_DC-61_DT-60BBBBB00700.27 BB00
0141kx5_I_DT-60_DG-59B12BB04780.19 BB04
0151kx5_I_DG-59_DC-58BBBBB00880.18 BB00
0161kx5_I_DC-58_DA-57BB2BB07770.39 BB07
0171kx5_I_DA-57_DG-56BBBBB00370.40 BB00
0181kx5_I_DG-56_DA-55BBBBB00870.26 BB00
0191kx5_I_DA-55_DT-54BBBBB00870.19 BB00
0201kx5_I_DT-54_DA-53BBBBB00810.28 BB00
0211kx5_I_DA-53_DC-52BBwBB11540.30 BB11
0221kx5_I_DC-52_DT-51BBBBB00750.23 BB00
0231kx5_I_DT-51_DA-50BBwBB02410.28 BB02
0241kx5_I_DA-50_DC-49BBBBB00900.19 BB00
0251kx5_I_DC-49_DC-48BBBBB00890.20 BB00
0261kx5_I_DC-48_DA-47BB2BB07700.25 BB07
0271kx5_I_DA-47_DA-46B12BB04370.35 BB04
0281kx5_I_DA-46_DA-45BBBBB00750.18 BB00
0291kx5_I_DA-45_DA-44BBBBB00930.20 BB00
0301kx5_I_DA-44_DG-43B12BB04640.18 BB04
0311kx5_I_DG-43_DT-42BBBBB00600.38 BB00
0321kx5_I_DT-42_DG-41BBBBB00700.18 BB00
0331kx5_I_DG-41_DT-40BBwBB02300.38 BB02
0341kx5_I_DT-40_DA-39BBBBB00700.30 BB00
0351kx5_I_DA-39_DT-38BBBBB00900.21 BB00
0361kx5_I_DT-38_DT-37BBBBB00810.30 BB00
0371kx5_I_DT-37_DT-36BBBBB00930.11 BB00
0381kx5_I_DT-36_DG-35BB2BB07840.32 BB07
0391kx5_I_DG-35_DG-34BBBBB00710.29 BB00
0401kx5_I_DG-34_DA-33BB2BB07920.23 BB07
0411kx5_I_DA-33_DA-32BBBBB00940.11 BB00
0421kx5_I_DA-32_DA-31BBBBB00870.19 BB00
0431kx5_I_DA-31_DC-30BBBBB00850.21 BB00
0441kx5_I_DC-30_DT-29BBBBB00890.17 BB00
0451kx5_I_DT-29_DG-28BB2BB07930.13 BB07
0461kx5_I_DG-28_DC-27BBBBB00730.26 BB00
0471kx5_I_DC-27_DT-26BB2BB07790.20 BB07
0481kx5_I_DT-26_DC-25BBBBB00810.27 BB00
0491kx5_I_DC-25_DC-24BB2BB07700.22 BB07
0501kx5_I_DC-24_DA-23BBBBB00900.20 BB00
0511kx5_I_DA-23_DT-22BBwBB02680.22 BB02
0521kx5_I_DT-22_DC-21BBwBB02650.27 BB02
0531kx5_I_DC-21_DA-20BBBBB00670.35 BB00
0541kx5_I_DA-20_DA-19NANNANT00.36 BB17
0551kx5_I_DA-19_DA-18NANNANT00.96 BB08
0561kx5_I_DA-18_DA-17BBwBB16590.35 BB16
0571kx5_I_DA-17_DG-16BBBBB00700.24 BB00
0581kx5_I_DG-16_DG-15BB2BB07690.28 BB07
0591kx5_I_DG-15_DC-14BBBBB00890.18 BB00
0601kx5_I_DC-14_DA-13B12BB04850.19 BB04
0611kx5_I_DA-13_DT-12BBBBB00920.12 BB00
0621kx5_I_DT-12_DG-11BBBBB00920.15 BB00
0631kx5_I_DG-11_DT-10BBBBB00940.19 BB00
0641kx5_I_DT-10_DT-9BBBBB00880.19 BB00
0651kx5_I_DT-9_DC-8BBBBB00860.15 BB00
0661kx5_I_DC-8_DA-7BBBBB00670.23 BB00
0671kx5_I_DA-7_DG-6BB2BB07840.29 BB07
0681kx5_I_DG-6_DC-5BBBBB00720.23 BB00
0691kx5_I_DC-5_DT-4BB2BB07220.26 BB07
0701kx5_I_DT-4_DG-3BBBBB00430.33 BB00
0711kx5_I_DG-3_DG-2BBBBB00730.25 BB00
0721kx5_I_DG-2_DA-1BB2BB07780.23 BB07
0731kx5_I_DA-1_DA0BBBBB00910.12 BB00
0741kx5_I_DA0_DT1BBwBB02880.20 BB02
0751kx5_I_DT1_DC2BBBBB00830.16 BB00
0761kx5_I_DC2_DC3BBBBB00860.23 BB00
0771kx5_I_DC3_DA4BB2BB07950.26 BB07
0781kx5_I_DA4_DG5BBBBB00820.24 BB00
0791kx5_I_DG5_DC6BB2BB07860.30 BB07
0801kx5_I_DC6_DT7BBBBB00580.37 BB00
0811kx5_I_DT7_DG8B12BB04680.23 BB04
0821kx5_I_DG8_DA9BBBBB00870.16 BB00
0831kx5_I_DA9_DA10BBBBB00960.11 BB00
0841kx5_I_DA10_DC11BBBBB00730.22 BB00
0851kx5_I_DC11_DA12BBBBB00630.37 BB00
0861kx5_I_DA12_DT13BBBBB01850.20 BB01
0871kx5_I_DT13_DG14BBBBB00680.23 BB00
0881kx5_I_DG14_DC15BB2BB07540.25 BB07
0891kx5_I_DC15_DC16BB2BB07620.37 BB07
0901kx5_I_DC16_DT17BB2BB07720.20 BB07
0911kx5_I_DT17_DT18BBBBB01880.15 BB01
0921kx5_I_DT18_DT19BBBBB00830.15 BB00
0931kx5_I_DT19_DT20BBBBB00500.22 BB00
0941kx5_I_DT20_DG21BBBBB00720.23 BB00
0951kx5_I_DG21_DA22BBBBB00790.32 BB00
0961kx5_I_DA22_DT23BBBBB00830.28 BB00
0971kx5_I_DT23_DG24B12BB04860.21 BB04
0981kx5_I_DG24_DG25BBBBB00850.29 BB00
0991kx5_I_DG25_DA26BB2BB07820.33 BB07
1001kx5_I_DA26_DG27BBBBB00720.34 BB00
1011kx5_I_DG27_DC28BB2BB07920.19 BB07
1021kx5_I_DC28_DA29BBBBB00890.24 BB00
1031kx5_I_DA29_DG30B12BB04800.25 BB04
1041kx5_I_DG30_DT31BBBBB00740.33 BB00
1051kx5_I_DT31_DT32BBBBB00860.25 BB00
1061kx5_I_DT32_DT33BBBBB00830.28 BB00
1071kx5_I_DT33_DC34BBBBB00860.22 BB00
1081kx5_I_DC34_DC35B12BB04790.23 BB04
1091kx5_I_DC35_DA36BB2BB07830.23 BB07
1101kx5_I_DA36_DA37BBBBB00900.14 BB00
1111kx5_I_DA37_DA38B12BB04820.12 BB04
1121kx5_I_DA38_DT39BBBBB00760.24 BB00
1131kx5_I_DT39_DA40BBBBB00870.23 BB00
1141kx5_I_DA40_DC41BBwBB02880.15 BB02
1151kx5_I_DC41_DA42BBBBB00930.21 BB00
1161kx5_I_DA42_DC43BBBBB00890.15 BB00
1171kx5_I_DC43_DT44BBBBB00680.37 BB00
1181kx5_I_DT44_DT45BBBBB00650.38 BB00
1191kx5_I_DT45_DT46BBBBB00870.21 BB00
1201kx5_I_DT46_DT47BBBBB00910.12 BB00
1211kx5_I_DT47_DG48B12BB04710.34 BB04
1221kx5_I_DG48_DG49BBBBB00870.16 BB00
1231kx5_I_DG49_DT50BBBBB00930.17 BB00
1241kx5_I_DT50_DA51BBwBB02720.20 BB02
1251kx5_I_DA51_DG52BBwBB02870.24 BB02
1261kx5_I_DG52_DT53BBBBB00700.34 BB00
1271kx5_I_DT53_DA54BBBBB00690.31 BB00
1281kx5_I_DA54_DT55BBBBB00710.39 BB00
1291kx5_I_DT55_DC56BBBBB00780.29 BB00
1301kx5_I_DC56_DT57BBBBB00870.21 BB00
1311kx5_I_DT57_DG58BB2BB07850.27 BB07
1321kx5_I_DG58_DC59BBBBB00710.18 BB00
1331kx5_I_DC59_DA60BB2BB07910.19 BB07
1341kx5_I_DA60_DG61BBBBB00840.23 BB00
1351kx5_I_DG61_DG62BBBBB00780.30 BB00
1361kx5_I_DG62_DT63BBBBB00910.24 BB00
1371kx5_I_DT63_DG64BBwBB02820.23 BB02
1381kx5_I_DG64_DG65BBBBB00610.41 BB00
1391kx5_I_DG65_DA66B12BB04780.24 BB04
1401kx5_I_DA66_DT67BBBBB00620.37 BB00
1411kx5_I_DT67_DA68BB2BB07550.34 BB07
1421kx5_I_DA68_DT69BBBBB00910.18 BB00
1431kx5_I_DT69_DT70BBBBB01870.15 BB01
1441kx5_I_DT70_DG71BBBBB00750.23 BB00
1451kx5_I_DG71_DA72B12BB04830.25 BB04
1461kx5_I_DA72_DT73BBwBB02400.35 BB02
1471kx5_J_DA-73_DT-72BBBBB00450.37 BB00
1481kx5_J_DT-72_DC-71BBBBB00910.20 BB00
1491kx5_J_DC-71_DA-70B12BB04590.30 BB04
1501kx5_J_DA-70_DA-69BBBBB00900.16 BB00
1511kx5_J_DA-69_DT-68BBwBB02750.19 BB02
1521kx5_J_DT-68_DA-67BBBBB00680.26 BB00
1531kx5_J_DA-67_DT-66BBBBB00890.17 BB00
1541kx5_J_DT-66_DC-65BBBBB00700.23 BB00
1551kx5_J_DC-65_DC-64BBBBB00840.25 BB00
1561kx5_J_DC-64_DA-63BBBBB00840.25 BB00
1571kx5_J_DA-63_DC-62BBBBB00790.25 BB00
1581kx5_J_DC-62_DC-61BBBBB00900.20 BB00
1591kx5_J_DC-61_DT-60BBBBB00890.22 BB00
1601kx5_J_DT-60_DG-59BB2BB07640.24 BB07
1611kx5_J_DG-59_DC-58BBBBB00910.20 BB00
1621kx5_J_DC-58_DA-57BB2BB07800.36 BB07
1631kx5_J_DA-57_DG-56BBBBB00780.27 BB00
1641kx5_J_DG-56_DA-55B12BB04750.16 BB04
1651kx5_J_DA-55_DT-54BBBBB00770.23 BB00
1661kx5_J_DT-54_DA-53BBBBB00700.34 BB00
1671kx5_J_DA-53_DC-52BBBBB00530.34 BB00
1681kx5_J_DC-52_DT-51BBBBB00790.20 BB00
1691kx5_J_DT-51_DA-50BBBBB00870.22 BB00
1701kx5_J_DA-50_DC-49BBBBB00940.15 BB00
1711kx5_J_DC-49_DC-48BBBBB00860.24 BB00
1721kx5_J_DC-48_DA-47BB2BB07820.30 BB07
1731kx5_J_DA-47_DA-46BBBBB00580.26 BB00
1741kx5_J_DA-46_DA-45BB2BB07540.23 BB07
1751kx5_J_DA-45_DA-44BBBBB00860.14 BB00
1761kx5_J_DA-44_DG-43B12BB04780.15 BB04
1771kx5_J_DG-43_DT-42BBBBB00860.21 BB00
1781kx5_J_DT-42_DG-41BBBBB00910.21 BB00
1791kx5_J_DG-41_DT-40BBBBB00250.39 BB00
1801kx5_J_DT-40_DA-39NANNANT00.35 BA17
1811kx5_J_DA-39_DT-38BBBBB00770.36 BB00
1821kx5_J_DT-38_DT-37BBBBB00800.26 BB00
1831kx5_J_DT-37_DT-36BBBBB00920.12 BB00
1841kx5_J_DT-36_DG-35BB2BB07890.28 BB07
1851kx5_J_DG-35_DG-34BBBBB00770.30 BB00
1861kx5_J_DG-34_DA-33BB2BB07860.24 BB07
1871kx5_J_DA-33_DA-32BBwBB02890.26 BB02
1881kx5_J_DA-32_DA-31BBBBB00640.34 BB00
1891kx5_J_DA-31_DC-30BBBBB00920.14 BB00
1901kx5_J_DC-30_DT-29BBBBB00830.16 BB00
1911kx5_J_DT-29_DG-28BB2BB07940.21 BB07
1921kx5_J_DG-28_DC-27BBBBB00890.27 BB00
1931kx5_J_DC-27_DT-26B12BB04660.33 BB04
1941kx5_J_DT-26_DC-25BBBBB00760.32 BB00
1951kx5_J_DC-25_DC-24BB2BB07700.27 BB07
1961kx5_J_DC-24_DA-23BBBBB00870.19 BB00
1971kx5_J_DA-23_DT-22BBBBB00660.29 BB00
1981kx5_J_DT-22_DC-21BBBBB00750.33 BB00
1991kx5_J_DC-21_DA-20BBBBB00640.27 BB00
2001kx5_J_DA-20_DA-19B12BB04570.30 BB04
2011kx5_J_DA-19_DA-18miBBB10630.35 BB10
2021kx5_J_DA-18_DA-17BBBBB00860.18 BB00
2031kx5_J_DA-17_DG-16BB2BB07740.15 BB07
2041kx5_J_DG-16_DG-15BB2BB07960.21 BB07
2051kx5_J_DG-15_DC-14BBBBB00820.22 BB00
2061kx5_J_DC-14_DA-13B12BB04900.15 BB04
2071kx5_J_DA-13_DT-12BBBBB01960.17 BB01
2081kx5_J_DT-12_DG-11BBBBB00720.28 BB00
2091kx5_J_DG-11_DT-10BBBBB00750.26 BB00
2101kx5_J_DT-10_DT-9BBBBB00830.21 BB00
2111kx5_J_DT-9_DC-8BBBBB01820.19 BB01
2121kx5_J_DC-8_DA-7BBBBB00720.20 BB00
2131kx5_J_DA-7_DG-6BB2BB07820.29 BB07
2141kx5_J_DG-6_DC-5BBBBB00770.24 BB00
2151kx5_J_DC-5_DT-4BB2BB07150.27 BB07
2161kx5_J_DT-4_DG-3BBBBB00360.32 BB00
2171kx5_J_DG-3_DG-2BBBBB00890.13 BB00
2181kx5_J_DG-2_DA-1B12BB04670.27 BB04
2191kx5_J_DA-1_DT0BBBBB00800.23 BB00
2201kx5_J_DT0_DT1BBBBB00870.13 BB00
2211kx5_J_DT1_DC2BBBBB00670.17 BB00
2221kx5_J_DC2_DC3BBBBB00830.25 BB00
2231kx5_J_DC3_DA4BB2BB07900.27 BB07
2241kx5_J_DA4_DG5BBBBB00790.21 BB00
2251kx5_J_DG5_DC6BB2BB07880.27 BB07
2261kx5_J_DC6_DT7BBBBB00370.34 BB00
2271kx5_J_DT7_DG8B12BB04470.20 BB04
2281kx5_J_DG8_DA9BBBBB00960.15 BB00
2291kx5_J_DA9_DA10BBBBB00950.11 BB00
2301kx5_J_DA10_DC11BBwBB02880.20 BB02
2311kx5_J_DC11_DA12BBBBB00740.30 BB00
2321kx5_J_DA12_DT13BBwBB02620.36 BB02
2331kx5_J_DT13_DG14BBBBB00620.53 BB00
2341kx5_J_DG14_DC15BB2BB07760.40 BB07
2351kx5_J_DC15_DC16BBBBB00770.31 BB00
2361kx5_J_DC16_DT17BB2BB07750.33 BB07
2371kx5_J_DT17_DT18BBBBB00850.19 BB00
2381kx5_J_DT18_DT19BBBBB00760.23 BB00
2391kx5_J_DT19_DT20NANNANT00.67 BB07
2401kx5_J_DT20_DG21NANNANT00.62 BB07
2411kx5_J_DG21_DA22BBBBB00320.17 BB00
2421kx5_J_DA22_DT23B12BB04780.31 BB04
2431kx5_J_DT23_DG24BBwBB11750.22 BB11
2441kx5_J_DG24_DG25BBBBB00340.50 BB00
2451kx5_J_DG25_DA26BB2BB07910.26 BB07
2461kx5_J_DA26_DG27BBBBB00760.33 BB00
2471kx5_J_DG27_DC28BB2BB07920.18 BB07
2481kx5_J_DC28_DA29BBBBB00740.35 BB00
2491kx5_J_DA29_DG30B12BB04730.27 BB04
2501kx5_J_DG30_DT31BBBBB00810.26 BB00
2511kx5_J_DT31_DT32BBBBB00860.23 BB00
2521kx5_J_DT32_DT33BBwBB02860.19 BB02
2531kx5_J_DT33_DC34BBBBB00660.38 BB00
2541kx5_J_DC34_DC35B12BB04810.23 BB04
2551kx5_J_DC35_DA36BB2BB07820.27 BB07
2561kx5_J_DA36_DA37BBBBB00840.17 BB00
2571kx5_J_DA37_DA38B12BB04800.13 BB04
2581kx5_J_DA38_DT39BBBBB00860.16 BB00
2591kx5_J_DT39_DA40BBBBB00950.12 BB00
2601kx5_J_DA40_DC41BBBBB00790.25 BB00
2611kx5_J_DC41_DA42BBBBB00900.20 BB00
2621kx5_J_DA42_DC43BBwBB02820.24 BB02
2631kx5_J_DC43_DT44BBBBB00830.18 BB00
2641kx5_J_DT44_DT45BBBBB00800.27 BB00
2651kx5_J_DT45_DT46BBBBB00870.22 BB00
2661kx5_J_DT46_DT47BBBBB00880.13 BB00
2671kx5_J_DT47_DG48B12BB04630.30 BB04
2681kx5_J_DG48_DG49BBBBB00650.25 BB00
2691kx5_J_DG49_DT50BBBBB00950.15 BB00
2701kx5_J_DT50_DA51BBBBB00840.20 BB00
2711kx5_J_DA51_DG52BBBBB00840.20 BB00
2721kx5_J_DG52_DT53BBwBB02920.10 BB02
2731kx5_J_DT53_DA54BBwBB02820.17 BB02
2741kx5_J_DA54_DT55BBBBB00770.26 BB00
2751kx5_J_DT55_DC56BBwBB11910.18 BB11
2761kx5_J_DC56_DT57BBwBB16790.32 BB16
2771kx5_J_DT57_DG58BB2BB07690.31 BB07
2781kx5_J_DG58_DC59BBBBB00700.23 BB00
2791kx5_J_DC59_DA60BB2BB07980.21 BB07
2801kx5_J_DA60_DG61BBBBB00860.26 BB00
2811kx5_J_DG61_DG62NANNANT00.40 BB02
2821kx5_J_DG62_DT63BBBBB00790.32 BB00
2831kx5_J_DT63_DG64BBBBB00930.19 BB00
2841kx5_J_DG64_DG65B12BB04760.19 BB04
2851kx5_J_DG65_DA66BBBBB00780.24 BB00
2861kx5_J_DA66_DT67BBBBB00920.15 BB00
2871kx5_J_DT67_DA68BBBBB00890.25 BB00
2881kx5_J_DA68_DT69BBBBB00870.18 BB00
2891kx5_J_DT69_DT70BBBBB01880.17 BB01
2901kx5_J_DT70_DG71BBBBB00820.18 BB00
2911kx5_J_DG71_DA72B12BB04930.17 BB04
2921kx5_J_DA72_DT73BBwBB02630.18 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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