Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA APTAMER COMPLEXED WITH CITRULLINE, NMR
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1kod_A_A5_G6 | AAA | AA02 | 39 | 0.37 |
| 02 | 1kod_A_G6_A7 | AAA | AA02 | 40 | 0.31 |
| 03 | 1kod_A_A7_A8 | NAN | NANT | 0 | 0.91 |
| 04 | 1kod_A_A8_G9 | NAN | NANT | 0 | 0.86 |
| 05 | 1kod_A_G9_G10 | NAN | NANT | 0 | 1.43 |
| 06 | 1kod_A_G10_A11 | AAA | AA04 | 37 | 0.46 |
| 07 | 1kod_A_A11_G12 | NAN | NANT | 0 | 0.32 |
| 08 | 1kod_A_G12_U13 | B-A | BA10 | 80 | 0.28 |
| 09 | 1kod_A_U13_G14 | AAA | AA00 | 10 | 0.62 |
| 10 | 1kod_A_G14_U15 | AAA | AA04 | 9 | 0.46 |
| 11 | 1kod_B_A27_C28 | NAN | NANT | 0 | 1.09 |
| 12 | 1kod_B_C28_G29 | NAN | NANT | 0 | 0.55 |
| 13 | 1kod_B_G29_G30 | NAN | NANT | 0 | 1.54 |
| 14 | 1kod_B_G30_U31 | NAN | NANT | 0 | 0.94 |
| 15 | 1kod_B_U31_U32 | NAN | NANT | 0 | 0.90 |
| 16 | 1kod_B_U32_A33 | NAN | NANT | 0 | 0.74 |
| 17 | 1kod_B_A33_G34 | NAN | NANT | 0 | 1.35 |
| 18 | 1kod_B_G34_G35 | NAN | NANT | 0 | 1.59 |
| 19 | 1kod_B_G35_U36 | NAN | NANT | 0 | 0.78 |
| 20 | 1kod_B_U36_C37 | AAA | AA00 | 31 | 0.42 |
| 21 | 1kod_B_C37_G38 | NAN | NANT | 0 | 0.62 |
| 22 | 1kod_B_G38_C39 | B-A | BA05 | 44 | 0.29 |
| 23 | 1kod_B_C39_U40 | AAA | AA04 | 23 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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