Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1kln_B_DG2_DC3 | NAN | NANT | 0 | 0.76 |
| 02 | 1kln_B_DC3_DC4 | NAN | NANT | 0 | 0.38 |
| 03 | 1kln_B_DC4_DT5 | BBw | BB17 | 40 | 0.43 |
| 04 | 1kln_B_DT5_DC6 | NAN | NANT | 0 | 0.39 |
| 05 | 1kln_B_DC6_DG7 | NAN | NANT | 0 | 0.39 |
| 06 | 1kln_B_DG7_DC8 | NAN | NANT | 0 | 0.41 |
| 07 | 1kln_B_DC8_DG9 | miB | BB14 | 45 | 0.24 |
| 08 | 1kln_B_DG9_DG10 | NAN | NANT | 0 | 0.56 |
| 09 | 1kln_B_DG10_DC11 | NAN | NANT | 0 | 0.35 |
| 10 | 1kln_B_DC11_DG12 | NAN | NANT | 0 | 0.56 |
| 11 | 1kln_B_DG12_DG13 | NAN | NANT | 0 | 0.51 |
| 12 | 1kln_B_DG13_DC14 | NAN | NANT | 0 | 0.91 |
| 13 | 1kln_C_DC20_DC21 | NAN | NANT | 0 | 0.60 |
| 14 | 1kln_C_DC21_DG23 | NAN | NANT | 0 | 0.61 |
| 15 | 1kln_C_DG23_DC24 | NAN | NANT | 0 | 0.46 |
| 16 | 1kln_C_DC24_DG25 | NAN | NANT | 0 | 0.40 |
| 17 | 1kln_C_DG25_DA26 | NAN | NANT | 0 | 0.44 |
| 18 | 1kln_C_DA26_DG27 | BBB | BB00 | 68 | 0.21 |
| 19 | 1kln_C_DG27_DG28 | B-A | BA08 | 46 | 0.34 |
| 20 | 1kln_C_DG28_DC29 | NAN | NANT | 0 | 0.94 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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