DNATCO v4.1: results

Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation.

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1kh6_A_G1_G2	AAA	AA00	88	0.16	AA00
02	1kh6_A_G2_C3	AAA	AA00	87	0.18	AA00
03	1kh6_A_C3_G4	AAA	AA00	90	0.16	AA00
04	1kh6_A_G4_G5	AAA	AA00	86	0.20	AA00
05	1kh6_A_G5_A6	NAN	NANT	0	0.75	OP08
06	1kh6_A_A6_A7	AAu	AA12	18	0.52	AA12
07	1kh6_A_A7_C8	AAw	AA06	81	0.16	AA06
08	1kh6_A_C8_C9	NAN	NANT	0	0.51	AA08
09	1kh6_A_C9_G10	AAu	AA12	31	0.42	AA12
10	1kh6_A_5BU16_A17	NAN	NANT	0	0.62	AA04
11	1kh6_A_A17_C18	AAw	AA01	71	0.27	AA01
12	1kh6_A_C18_A19	AAA	AA04	26	0.55	AA04
13	1kh6_A_A19_C20	AAw	AA06	65	0.38	AA06
14	1kh6_A_C20_C21	NAN	NANT	0	0.66	AA06
15	1kh6_A_C21_G22	AAA	AA00	25	0.41	AA00
16	1kh6_A_G22_G23	AAA	AA00	76	0.20	AA00
17	1kh6_A_G23_A24	AAA	AA08	8	0.72	AA08
18	1kh6_A_A24_A25	AAA	AA00	88	0.09	AA00
19	1kh6_A_A25_5BU26	AAA	AA00	48	0.29	AA00
20	1kh6_A_5BU26_C27	AAA	AA00	76	0.13	AA00
21	1kh6_A_C27_C28	AAA	AA00	55	0.31	AA00
22	1kh6_A_C28_G29	AAA	AA00	64	0.32	AA00
23	1kh6_A_G29_A30	OPN	OP03	56	0.25	OP03
24	1kh6_A_A30_A31	AAA	AA08	82	0.26	AA08
25	1kh6_A_A31_A32	AAA	AA00	59	0.28	AA00
26	1kh6_A_A32_G33	NAN	NANT	0	0.79	AA04
27	1kh6_A_G33_G34	AAA	AA00	89	0.23	AA00
28	1kh6_A_G34_A35	AAA	AA00	93	0.21	AA00
29	1kh6_A_A35_5BU36	AAA	AA08	83	0.18	AA08
30	1kh6_A_5BU36_5BU37	AAA	AA08	80	0.18	AA08
31	1kh6_A_5BU37_5BU38	NAN	NANT	0	0.62	AA12
32	1kh6_A_5BU38_G39	NAN	NANT	0	1.62	OP31
33	1kh6_A_G39_G40	AAA	AA00	58	0.27	AA00
34	1kh6_A_G40_G41	AAw	AA01	61	0.20	AA01
35	1kh6_A_G41_C42	AAA	AA00	74	0.17	AA00
36	1kh6_A_C42_G43	AAA	AA00	76	0.36	AA00
37	1kh6_A_5BU44_G45	AAu	AA12	36	0.40	AA12
38	1kh6_A_G45_C46	AAA	AA00	44	0.27	AA00
39	1kh6_A_C46_C47	AAA	AA00	68	0.22	AA00
40	1kh6_A_C47_C48	AAA	AA00	76	0.27	AA00
41	1kh6_A_C48_C49	AAA	AA00	87	0.18	AA00
42	1kh6_A_C49_C50	AAA	AA00	59	0.26	AA00
43	1kh6_A_C50_G51	AAA	AA00	79	0.27	AA00
44	1kh6_A_G51_C52	AAw	AA01	41	0.25	AA01
45	1kh6_A_C52_C53	AAw	AA06	36	0.47	AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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