Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure and Packing of Human Telomeric DNA

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011kf1_A_DA1_DG2NANNANT00.67 OP31
021kf1_A_DG2_DG3NANNANT00.50 AB03
031kf1_A_DG3_DG4miBBB15470.34 BB15
041kf1_A_DG4_DT5OPNOP19800.17 OP19
051kf1_A_DT5_DT6NANNANT01.38 OP03
061kf1_A_DT6_DA7A-BAB04890.21 AB04
071kf1_A_DA7_DG8NANNANT01.60 IC03
081kf1_A_DG8_DG9BBBBB00500.35 BB00
091kf1_A_DG9_DG10BBBBB00660.35 BB00
101kf1_A_DG10_DT11OPNOP19890.29 OP19
111kf1_A_DT11_DT12NANNANT01.44 OP03
121kf1_A_DT12_DA13A-BAB05140.25 AB05
131kf1_A_DA13_DG14NANNANT01.49 IC02
141kf1_A_DG14_DG15BBBBB00540.31 BB00
151kf1_A_DG15_DG16BBBBB00710.34 BB00
161kf1_A_DG16_DT17OPNOP19620.15 OP19
171kf1_A_DT17_DT18NANNANT01.24 OP04
181kf1_A_DT18_DA19A-BAB04580.19 AB04
191kf1_A_DA19_DG20NANNANT01.96 OP20
201kf1_A_DG20_DG21BBBBB00770.20 BB00
211kf1_A_DG21_DG22BBBBB00570.42 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N