Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MATALPHA2 HOMEODOMAIN BOUND TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1k61_E_DA1_DC2 | BBB | BB00 | 69 | 0.21 |
| 02 | 1k61_E_DC2_DA3 | BBB | BB00 | 70 | 0.39 |
| 03 | 1k61_E_DA3_DT4 | BBB | BB00 | 76 | 0.29 |
| 04 | 1k61_E_DT4_DG5 | B12 | BB04 | 77 | 0.19 |
| 05 | 1k61_E_DG5_DT6 | BBB | BB00 | 73 | 0.32 |
| 06 | 1k61_E_DT6_DA7 | NAN | NANT | 0 | 0.35 |
| 07 | 1k61_E_DA7_DA8 | SYN | BBS1 | 86 | 0.16 |
| 08 | 1k61_E_DA8_DT9 | B12 | BB04 | 71 | 0.25 |
| 09 | 1k61_E_DT9_DT10 | BBB | BB00 | 70 | 0.23 |
| 10 | 1k61_E_DT10_DC11 | BB2 | BB07 | 64 | 0.21 |
| 11 | 1k61_E_DC11_DA12 | B12 | BB04 | 86 | 0.24 |
| 12 | 1k61_E_DA12_DT13 | BBB | BB00 | 85 | 0.21 |
| 13 | 1k61_E_DT13_DT14 | B12 | BB04 | 68 | 0.23 |
| 14 | 1k61_E_DT14_DT15 | BBB | BB00 | 77 | 0.24 |
| 15 | 1k61_E_DT15_DA16 | BBB | BB00 | 81 | 0.25 |
| 16 | 1k61_E_DA16_DC17 | BBB | BB00 | 85 | 0.22 |
| 17 | 1k61_E_DC17_DA18 | BBB | BB00 | 87 | 0.23 |
| 18 | 1k61_E_DA18_DC19 | BBB | BB00 | 52 | 0.27 |
| 19 | 1k61_E_DC19_DG20 | BBB | BB00 | 72 | 0.20 |
| 20 | 1k61_E_DG20_DC21 | BBw | BB02 | 79 | 0.17 |
| 21 | 1k61_F_5IU22_DG23 | BBB | BB00 | 56 | 0.32 |
| 22 | 1k61_F_DG23_DC24 | BBB | BB01 | 79 | 0.22 |
| 23 | 1k61_F_DC24_DG25 | BBB | BB00 | 62 | 0.38 |
| 24 | 1k61_F_DG25_DT26 | BBB | BB00 | 91 | 0.15 |
| 25 | 1k61_F_DT26_DG27 | BBB | BB00 | 79 | 0.22 |
| 26 | 1k61_F_DG27_DT28 | BBw | BB02 | 44 | 0.31 |
| 27 | 1k61_F_DT28_DA29 | BBB | BB00 | 73 | 0.26 |
| 28 | 1k61_F_DA29_DA30 | BBB | BB00 | 91 | 0.09 |
| 29 | 1k61_F_DA30_DA31 | BBB | BB00 | 95 | 0.11 |
| 30 | 1k61_F_DA31_DT32 | BBB | BB00 | 93 | 0.19 |
| 31 | 1k61_F_DT32_DG33 | BB2 | BB07 | 94 | 0.19 |
| 32 | 1k61_F_DG33_DA34 | BBB | BB00 | 91 | 0.17 |
| 33 | 1k61_F_DA34_DA35 | BBB | BB00 | 86 | 0.18 |
| 34 | 1k61_F_DA35_DT36 | BBw | BB02 | 77 | 0.15 |
| 35 | 1k61_F_DT36_DT37 | BBB | BB00 | 64 | 0.32 |
| 36 | 1k61_F_DT37_DA38 | BBB | BB00 | 76 | 0.23 |
| 37 | 1k61_F_DA38_DC39 | BBB | BB00 | 92 | 0.20 |
| 38 | 1k61_F_DC39_DA40 | BBB | BB00 | 33 | 0.38 |
| 39 | 1k61_F_DA40_DT41 | BBB | BB00 | 46 | 0.30 |
| 40 | 1k61_F_DT41_DG42 | BBB | BB00 | 67 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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