Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the Dimeric lac Repressor/Operator O1/ONPF Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jwl_D_DT6_DG7 | NAN | NANT | 0 | 0.65 |
| 02 | 1jwl_D_DG7_DT8 | BBw | BB02 | 31 | 0.38 |
| 03 | 1jwl_D_DT8_DG9 | BBB | BB00 | 68 | 0.27 |
| 04 | 1jwl_D_DG9_DA10 | BBB | BB00 | 59 | 0.41 |
| 05 | 1jwl_D_DA10_DG11 | BBB | BB00 | 48 | 0.37 |
| 06 | 1jwl_D_DG11_DC12 | BBw | BB02 | 17 | 0.45 |
| 07 | 1jwl_D_DC12_DG13 | BBB | BB00 | 31 | 0.79 |
| 08 | 1jwl_D_DG13_DG14 | BBw | BB02 | 36 | 0.40 |
| 09 | 1jwl_D_DG14_DA15 | BBB | BB00 | 71 | 0.30 |
| 10 | 1jwl_D_DA15_DT16 | NAN | NANT | 0 | 0.60 |
| 11 | 1jwl_D_DT16_DA17 | BBB | BB00 | 43 | 0.48 |
| 12 | 1jwl_D_DA17_DA18 | B12 | BB05 | 36 | 0.31 |
| 13 | 1jwl_D_DA18_DC19 | BBB | BB00 | 47 | 0.32 |
| 14 | 1jwl_E_DG6_DT7 | miB | BB12 | 6 | 0.52 |
| 15 | 1jwl_E_DT7_DT8 | NAN | NANT | 0 | 0.65 |
| 16 | 1jwl_E_DT8_DA9 | B12 | BB04 | 53 | 0.28 |
| 17 | 1jwl_E_DA9_DT10 | NAN | NANT | 0 | 0.47 |
| 18 | 1jwl_E_DT10_DC11 | NAN | NANT | 0 | 0.46 |
| 19 | 1jwl_E_DC11_DC12 | NAN | NANT | 0 | 0.57 |
| 20 | 1jwl_E_DC12_DG13 | BBB | BB00 | 48 | 0.65 |
| 21 | 1jwl_E_DG13_DC14 | BBw | BB02 | 39 | 0.43 |
| 22 | 1jwl_E_DC14_DT15 | BBB | BB00 | 63 | 0.32 |
| 23 | 1jwl_E_DT15_DC16 | BBw | BB02 | 46 | 0.39 |
| 24 | 1jwl_E_DC16_DA17 | BBB | BB00 | 70 | 0.32 |
| 25 | 1jwl_E_DA17_DC18 | BBw | BB02 | 52 | 0.22 |
| 26 | 1jwl_E_DC18_DA19 | BBB | BB00 | 14 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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