DNATCO v4.1: results

NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1ju7-m10_A_G1_G2	NAN	NANT	0	0.59	AA12
002	1ju7-m1_A_G1_G2	NAN	NANT	0	0.95	AA13
003	1ju7-m2_A_G1_G2	NAN	NANT	0	0.70	AA12
004	1ju7-m3_A_G1_G2	AAw	AA01	6	0.75	AA01
005	1ju7-m4_A_G1_G2	NAN	NANT	0	0.87	AA10
006	1ju7-m5_A_G1_G2	NAN	NANT	0	0.82	AA01
007	1ju7-m6_A_G1_G2	NAN	NANT	0	0.63	AA01
008	1ju7-m7_A_G1_G2	NAN	NANT	0	0.60	AA01
009	1ju7-m8_A_G1_G2	NAN	NANT	0	0.94	AA01
010	1ju7-m9_A_G1_G2	NAN	NANT	0	0.67	AA12
011	1ju7-m10_A_G2_C3	AAw	AA01	31	0.25	AA01
012	1ju7-m1_A_G2_C3	AAw	AA01	12	0.41	AA01
013	1ju7-m2_A_G2_C3	AAw	AA01	42	0.32	AA01
014	1ju7-m3_A_G2_C3	AAw	AA01	17	0.33	AA01
015	1ju7-m4_A_G2_C3	AAA	AA00	49	0.29	AA00
016	1ju7-m5_A_G2_C3	AAw	AA01	12	0.47	AA01
017	1ju7-m6_A_G2_C3	AAw	AA01	7	0.58	AA01
018	1ju7-m7_A_G2_C3	AAw	AA06	35	0.47	AA06
019	1ju7-m8_A_G2_C3	AAw	AA01	20	0.51	AA01
020	1ju7-m9_A_G2_C3	AAA	AA00	29	0.29	AA00
021	1ju7-m10_A_C3_C4	AAw	AA01	74	0.32	AA01
022	1ju7-m1_A_C3_C4	NAN	NANT	0	0.39	AA01
023	1ju7-m2_A_C3_C4	NAN	NANT	0	0.35	AA01
024	1ju7-m3_A_C3_C4	AAw	AA01	70	0.35	AA01
025	1ju7-m4_A_C3_C4	AAw	AA01	18	0.25	AA01
026	1ju7-m5_A_C3_C4	NAN	NANT	0	0.39	AA01
027	1ju7-m6_A_C3_C4	NAN	NANT	0	0.31	AA01
028	1ju7-m7_A_C3_C4	NAN	NANT	0	0.39	AA01
029	1ju7-m8_A_C3_C4	NAN	NANT	0	0.34	AA01
030	1ju7-m9_A_C3_C4	NAN	NANT	0	0.34	AA01
031	1ju7-m10_A_C4_C5	AAA	AA08	15	0.43	AA08
032	1ju7-m1_A_C4_C5	NAN	NANT	0	0.87	AA01
033	1ju7-m2_A_C4_C5	NAN	NANT	0	0.86	AA01
034	1ju7-m3_A_C4_C5	AAA	AA08	10	0.43	AA08
035	1ju7-m4_A_C4_C5	NAN	NANT	0	0.82	AA01
036	1ju7-m5_A_C4_C5	NAN	NANT	0	0.82	AA01
037	1ju7-m6_A_C4_C5	NAN	NANT	0	0.89	AA01
038	1ju7-m7_A_C4_C5	NAN	NANT	0	0.84	AA01
039	1ju7-m8_A_C4_C5	NAN	NANT	0	0.78	AA01
040	1ju7-m9_A_C4_C5	NAN	NANT	0	0.81	AA01
041	1ju7-m10_A_C5_U6	AAw	AA01	36	0.41	AA01
042	1ju7-m1_A_C5_U6	AAw	AA01	42	0.43	AA01
043	1ju7-m2_A_C5_U6	AAw	AA01	47	0.32	AA01
044	1ju7-m3_A_C5_U6	AAw	AA01	49	0.37	AA01
045	1ju7-m4_A_C5_U6	AAw	AA01	53	0.34	AA01
046	1ju7-m5_A_C5_U6	AAw	AA01	23	0.46	AA01
047	1ju7-m6_A_C5_U6	AAw	AA01	61	0.30	AA01
048	1ju7-m7_A_C5_U6	AAw	AA01	32	0.41	AA01
049	1ju7-m8_A_C5_U6	AAw	AA01	70	0.24	AA01
050	1ju7-m9_A_C5_U6	AAw	AA01	44	0.34	AA01
051	1ju7-m10_A_U6_U7	NAN	NANT	0	0.80	AA04
052	1ju7-m1_A_U6_U7	NAN	NANT	0	0.90	AA10
053	1ju7-m2_A_U6_U7	NAN	NANT	0	0.32	AA05
054	1ju7-m3_A_U6_U7	NAN	NANT	0	0.87	AA10
055	1ju7-m4_A_U6_U7	AAw	AA05	65	0.31	AA05
056	1ju7-m5_A_U6_U7	NAN	NANT	0	0.79	AA04
057	1ju7-m6_A_U6_U7	NAN	NANT	0	0.84	AA10
058	1ju7-m7_A_U6_U7	NAN	NANT	0	0.85	AA04
059	1ju7-m8_A_U6_U7	NAN	NANT	0	0.86	AA10
060	1ju7-m9_A_U6_U7	AAw	AA05	66	0.32	AA05
061	1ju7-m10_A_U7_U8	NAN	NANT	0	0.37	AA08
062	1ju7-m1_A_U7_U8	NAN	NANT	0	0.35	AB05
063	1ju7-m2_A_U7_U8	NAN	NANT	0	0.69	AA10
064	1ju7-m3_A_U7_U8	NAN	NANT	0	0.77	AA10
065	1ju7-m4_A_U7_U8	NAN	NANT	0	0.35	AB05
066	1ju7-m5_A_U7_U8	NAN	NANT	0	0.41	AB05
067	1ju7-m6_A_U7_U8	NAN	NANT	0	0.74	AA11
068	1ju7-m7_A_U7_U8	A-B	AB05	9	0.30	AB05
069	1ju7-m8_A_U7_U8	NAN	NANT	0	0.68	AA06
070	1ju7-m9_A_U7_U8	NAN	NANT	0	0.35	AB05
071	1ju7-m10_A_U8_U9	NAN	NANT	0	1.04	BB20
072	1ju7-m1_A_U8_U9	NAN	NANT	0	0.81	OP22
073	1ju7-m2_A_U8_U9	NAN	NANT	0	0.85	OP22
074	1ju7-m3_A_U8_U9	NAN	NANT	0	0.82	OP22
075	1ju7-m4_A_U8_U9	NAN	NANT	0	0.83	OP22
076	1ju7-m5_A_U8_U9	NAN	NANT	0	0.87	OP22
077	1ju7-m6_A_U8_U9	NAN	NANT	0	0.81	OP22
078	1ju7-m7_A_U8_U9	NAN	NANT	0	1.05	BB08
079	1ju7-m8_A_U8_U9	NAN	NANT	0	0.85	OP22
080	1ju7-m9_A_U8_U9	NAN	NANT	0	0.80	OP22
081	1ju7-m10_A_U9_C10	NAN	NANT	0	1.36	OP22
082	1ju7-m1_A_U9_C10	NAN	NANT	0	1.34	OP22
083	1ju7-m2_A_U9_C10	NAN	NANT	0	1.41	OP22
084	1ju7-m3_A_U9_C10	NAN	NANT	0	1.38	OP22
085	1ju7-m4_A_U9_C10	NAN	NANT	0	1.35	OP22
086	1ju7-m5_A_U9_C10	NAN	NANT	0	1.39	OP22
087	1ju7-m6_A_U9_C10	NAN	NANT	0	1.34	OP22
088	1ju7-m7_A_U9_C10	NAN	NANT	0	0.87	OP16
089	1ju7-m8_A_U9_C10	NAN	NANT	0	1.41	OP22
090	1ju7-m9_A_U9_C10	NAN	NANT	0	1.35	OP22
091	1ju7-m10_A_C10_A11	NAN	NANT	0	1.18	OP27
092	1ju7-m1_A_C10_A11	NAN	NANT	0	1.09	OP27
093	1ju7-m2_A_C10_A11	NAN	NANT	0	1.21	OP27
094	1ju7-m3_A_C10_A11	NAN	NANT	0	1.85	OP16
095	1ju7-m4_A_C10_A11	NAN	NANT	0	1.17	OP27
096	1ju7-m5_A_C10_A11	NAN	NANT	0	0.97	OP27
097	1ju7-m6_A_C10_A11	NAN	NANT	0	1.06	OP27
098	1ju7-m7_A_C10_A11	NAN	NANT	0	0.92	OP27
099	1ju7-m8_A_C10_A11	NAN	NANT	0	0.96	OP27
100	1ju7-m9_A_C10_A11	NAN	NANT	0	1.22	OP27
101	1ju7-m10_A_A11_G12	NAN	NANT	0	0.96	AA01
102	1ju7-m1_A_A11_G12	NAN	NANT	0	0.97	AA01
103	1ju7-m2_A_A11_G12	NAN	NANT	0	0.94	AA01
104	1ju7-m3_A_A11_G12	AAA	AA03	17	0.48	AA03
105	1ju7-m4_A_A11_G12	NAN	NANT	0	0.92	AA01
106	1ju7-m5_A_A11_G12	NAN	NANT	0	0.51	AA03
107	1ju7-m6_A_A11_G12	NAN	NANT	0	0.97	AA01
108	1ju7-m7_A_A11_G12	NAN	NANT	0	0.97	AA01
109	1ju7-m8_A_A11_G12	AAA	AA03	17	0.53	AA03
110	1ju7-m9_A_A11_G12	NAN	NANT	0	0.97	AA01
111	1ju7-m10_A_G12_G13	AAw	AA01	88	0.20	AA01
112	1ju7-m1_A_G12_G13	AAw	AA01	45	0.25	AA01
113	1ju7-m2_A_G12_G13	AAw	AA01	69	0.33	AA01
114	1ju7-m3_A_G12_G13	AAw	AA01	42	0.23	AA01
115	1ju7-m4_A_G12_G13	AAw	AA01	64	0.41	AA01
116	1ju7-m5_A_G12_G13	AAw	AA01	38	0.20	AA01
117	1ju7-m6_A_G12_G13	AAw	AA01	37	0.26	AA01
118	1ju7-m7_A_G12_G13	AAw	AA01	31	0.30	AA01
119	1ju7-m8_A_G12_G13	AAw	AA01	34	0.22	AA01
120	1ju7-m9_A_G12_G13	AAw	AA01	86	0.22	AA01
121	1ju7-m10_A_G13_G14	AAu	AA12	26	0.51	AA12
122	1ju7-m1_A_G13_G14	NAN	NANT	0	0.69	AA01
123	1ju7-m2_A_G13_G14	NAN	NANT	0	0.46	AA12
124	1ju7-m3_A_G13_G14	NAN	NANT	0	0.59	AA12
125	1ju7-m4_A_G13_G14	NAN	NANT	0	0.55	AA03
126	1ju7-m5_A_G13_G14	AAu	AA12	17	0.55	AA12
127	1ju7-m6_A_G13_G14	NAN	NANT	0	0.98	AA01
128	1ju7-m7_A_G13_G14	NAN	NANT	0	0.60	AA01
129	1ju7-m8_A_G13_G14	NAN	NANT	0	0.79	AA01
130	1ju7-m9_A_G13_G14	AAu	AA12	14	0.57	AA12
131	1ju7-m10_A_G14_C15	NAN	NANT	0	0.46	AA10
132	1ju7-m1_A_G14_C15	AAw	AA06	41	0.34	AA06
133	1ju7-m2_A_G14_C15	AAw	AA01	42	0.35	AA01
134	1ju7-m3_A_G14_C15	NAN	NANT	0	0.41	AA10
135	1ju7-m4_A_G14_C15	AAw	AA01	45	0.32	AA01
136	1ju7-m5_A_G14_C15	AAw	AA01	36	0.36	AA01
137	1ju7-m6_A_G14_C15	AAw	AA01	25	0.41	AA01
138	1ju7-m7_A_G14_C15	AAw	AA06	44	0.35	AA06
139	1ju7-m8_A_G14_C15	AAw	AA06	17	0.28	AA06
140	1ju7-m9_A_G14_C15	AAw	AA06	40	0.30	AA06
141	1ju7-m10_A_C15_C16	NAN	NANT	0	0.78	AA09
142	1ju7-m1_A_C15_C16	NAN	NANT	0	0.87	AA03
143	1ju7-m2_A_C15_C16	NAN	NANT	0	0.89	AA07
144	1ju7-m3_A_C15_C16	NAN	NANT	0	0.81	AB04
145	1ju7-m4_A_C15_C16	NAN	NANT	0	1.75	OP19
146	1ju7-m5_A_C15_C16	NAN	NANT	0	0.92	AA07
147	1ju7-m6_A_C15_C16	NAN	NANT	0	0.94	AA07
148	1ju7-m7_A_C15_C16	NAN	NANT	0	1.04	AA07
149	1ju7-m8_A_C15_C16	NAN	NANT	0	1.73	OP19
150	1ju7-m9_A_C15_C16	NAN	NANT	0	0.85	AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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N

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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