Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Zif268 D20A mutant bound to the GCT DNA site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jk2_B_DA1_DG2 | SYN | BBS1 | 26 | 0.38 |
| 02 | 1jk2_B_DG2_DC3 | BBB | BB00 | 73 | 0.31 |
| 03 | 1jk2_B_DC3_DG4 | BB2 | BB07 | 46 | 0.36 |
| 04 | 1jk2_B_DG4_DT5 | BBB | BB00 | 60 | 0.42 |
| 05 | 1jk2_B_DT5_DG6 | B12 | BB04 | 60 | 0.27 |
| 06 | 1jk2_B_DG6_DG7 | BBB | BB00 | 82 | 0.23 |
| 07 | 1jk2_B_DG7_DG8 | BBB | BB00 | 85 | 0.19 |
| 08 | 1jk2_B_DG8_DC9 | BBB | BB00 | 79 | 0.25 |
| 09 | 1jk2_B_DC9_DT10 | B12 | BB04 | 80 | 0.22 |
| 10 | 1jk2_B_DT10_DG11 | BBB | BB00 | 92 | 0.18 |
| 11 | 1jk2_C_DT.A51_DC.A52 | BBB | BB00 | 67 | 0.38 |
| 12 | 1jk2_C_DT.B51_DC.B52 | B12 | BB05 | 9 | 0.43 |
| 13 | 1jk2_C_DC.A52_DA53 | BBw | BB02 | 78 | 0.34 |
| 14 | 1jk2_C_DC.B52_DA53 | BBw | BB02 | 75 | 0.34 |
| 15 | 1jk2_C_DA53_DG54 | BBB | BB00 | 63 | 0.26 |
| 16 | 1jk2_C_DG54_DC55 | NAN | NANT | 0 | 0.32 |
| 17 | 1jk2_C_DC55_DC56 | NAN | NANT | 0 | 0.60 |
| 18 | 1jk2_C_DC56_DC57 | BBB | BB01 | 87 | 0.27 |
| 19 | 1jk2_C_DC57_DA58 | BBB | BB00 | 56 | 0.19 |
| 20 | 1jk2_C_DA58_DC59 | BBB | BB00 | 36 | 0.26 |
| 21 | 1jk2_C_DC59_DG60 | BBB | BB00 | 41 | 0.23 |
| 22 | 1jk2_C_DG60_DC61 | BBB | BB00 | 75 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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