Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jj8_A_DT2_DG3 | NAN | NANT | 0 | 1.06 |
| 02 | 1jj8_A_DG3_5IU4 | BBw | BB16 | 50 | 0.63 |
| 03 | 1jj8_A_5IU4_DT5 | BBB | BB00 | 68 | 0.23 |
| 04 | 1jj8_A_DT5_DT6 | BBB | BB00 | 93 | 0.15 |
| 05 | 1jj8_A_DT6_DT7 | BBB | BB00 | 41 | 0.30 |
| 06 | 1jj8_A_DT7_DT8 | B12 | BB04 | 12 | 0.28 |
| 07 | 1jj8_A_DT8_DG9 | BBB | BB00 | 77 | 0.30 |
| 08 | 1jj8_A_DG9_DA10 | B12 | BB04 | 67 | 0.31 |
| 09 | 1jj8_A_DA10_DT11 | BBB | BB00 | 80 | 0.23 |
| 10 | 1jj8_A_DT11_DA12 | B12 | BB04 | 76 | 0.23 |
| 11 | 1jj8_A_DA12_DA13 | BBB | BB00 | 96 | 0.08 |
| 12 | 1jj8_A_DA13_DG14 | BBB | BB00 | 88 | 0.17 |
| 13 | 1jj8_B_DA16_DT17 | miB | BB12 | 39 | 0.47 |
| 14 | 1jj8_B_DT17_DC18 | BBw | BB16 | 71 | 0.42 |
| 15 | 1jj8_B_DC18_DT19 | BBw | BB02 | 58 | 0.19 |
| 16 | 1jj8_B_DT19_DT20 | BBB | BB00 | 80 | 0.21 |
| 17 | 1jj8_B_DT20_DA21 | BBB | BB00 | 67 | 0.16 |
| 18 | 1jj8_B_DA21_DT22 | BBB | BB00 | 79 | 0.30 |
| 19 | 1jj8_B_DT22_DC23 | BBB | BB00 | 72 | 0.25 |
| 20 | 1jj8_B_DC23_DA24 | BB2 | BB07 | 71 | 0.29 |
| 21 | 1jj8_B_DA24_DA25 | BBB | BB00 | 74 | 0.24 |
| 22 | 1jj8_B_DA25_DA26 | BB2 | BB07 | 68 | 0.21 |
| 23 | 1jj8_B_DA26_DA27 | BBB | BB00 | 90 | 0.22 |
| 24 | 1jj8_B_DA27_DA28 | B12 | BB04 | 48 | 0.34 |
| 25 | 1jj8_B_DA28_DC29 | BBB | BB00 | 66 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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