Conformers:
ABBIImiBZICOPNSYNN
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Human SRP19 in complex with helix 6 of Human SRP RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jid_B_G135_G136 | AAA | AA00 | 77 | 0.21 |
| 02 | 1jid_B_G136_5BU137 | AAA | AA08 | 88 | 0.16 |
| 03 | 1jid_B_5BU137_G138 | AAA | AA00 | 79 | 0.13 |
| 04 | 1jid_B_G138_A139 | AAA | AA00 | 69 | 0.26 |
| 05 | 1jid_B_A139_C140 | AAA | AA00 | 50 | 0.38 |
| 06 | 1jid_B_C140_C141 | AAA | AA00 | 87 | 0.20 |
| 07 | 1jid_B_C141_5BU142 | AAA | AA00 | 88 | 0.15 |
| 08 | 1jid_B_5BU142_C143 | AAA | AA00 | 84 | 0.15 |
| 09 | 1jid_B_C143_C144 | AAA | AA00 | 92 | 0.19 |
| 10 | 1jid_B_C144_C145 | AAA | AA00 | 86 | 0.18 |
| 11 | 1jid_B_C145_G146 | AAA | AA00 | 84 | 0.23 |
| 12 | 1jid_B_G146_G147 | AAA | AA00 | 90 | 0.15 |
| 13 | 1jid_B_G147_G148 | OPN | OP04 | 61 | 0.31 |
| 14 | 1jid_B_G148_A149 | AAw | AA01 | 69 | 0.35 |
| 15 | 1jid_B_A149_G150 | AAA | AA00 | 52 | 0.38 |
| 16 | 1jid_B_G150_C151 | NAN | NANT | 0 | 0.58 |
| 17 | 1jid_B_C151_G152 | AAA | AA00 | 58 | 0.24 |
| 18 | 1jid_B_G152_G153 | AAA | AA00 | 74 | 0.23 |
| 19 | 1jid_B_G153_G154 | AAw | AA01 | 85 | 0.18 |
| 20 | 1jid_B_G154_G155 | AAA | AA00 | 53 | 0.26 |
| 21 | 1jid_B_G155_G156 | AAA | AA00 | 85 | 0.27 |
| 22 | 1jid_B_G156_A157 | NAN | NANT | 0 | 0.34 |
| 23 | 1jid_B_A157_C158 | AAA | AA08 | 23 | 0.34 |
| 24 | 1jid_B_C158_C159 | AAA | AA00 | 76 | 0.19 |
| 25 | 1jid_B_C159_A160 | AAA | AA00 | 88 | 0.18 |
| 26 | 1jid_B_A160_C161 | AAA | AA00 | 83 | 0.18 |
| 27 | 1jid_B_C161_U162 | AAA | AA00 | 78 | 0.37 |
| 28 | 1jid_B_U162_A23163 | NAN | NANT | 0 | 0.72 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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