Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of the NC2-TBP-DNA Ternary Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jfi_D_DT601_DT602 | BBB | BB00 | 80 | 0.21 |
| 02 | 1jfi_D_DT602_DG603 | BBB | BB00 | 83 | 0.23 |
| 03 | 1jfi_D_DG603_DG604 | B12 | BB04 | 43 | 0.32 |
| 04 | 1jfi_D_DG604_DC605 | BBB | BB00 | 39 | 0.35 |
| 05 | 1jfi_D_DC605_DT606 | BBB | BB01 | 35 | 0.34 |
| 06 | 1jfi_D_DT606_DA607 | NAN | NANT | 0 | 0.53 |
| 07 | 1jfi_D_DA607_DT608 | NAN | NANT | 0 | 0.48 |
| 08 | 1jfi_D_DT608_DA609 | BBB | BB00 | 13 | 0.46 |
| 09 | 1jfi_D_DA609_DA610 | BBB | BB00 | 10 | 0.52 |
| 10 | 1jfi_D_DA610_DA611 | BBB | BB00 | 21 | 0.65 |
| 11 | 1jfi_D_DA611_DA612 | BBB | BB00 | 41 | 0.47 |
| 12 | 1jfi_D_DA612_DG613 | NAN | NANT | 0 | 0.63 |
| 13 | 1jfi_D_DG613_DG614 | BB2 | BB07 | 49 | 0.38 |
| 14 | 1jfi_D_DG614_DG615 | BBB | BB00 | 80 | 0.22 |
| 15 | 1jfi_D_DG615_DC616 | BBw | BB02 | 69 | 0.22 |
| 16 | 1jfi_D_DC616_DT617 | BBB | BB00 | 44 | 0.40 |
| 17 | 1jfi_D_DT617_DC618 | BBw | BB03 | 26 | 0.35 |
| 18 | 1jfi_E_DG702_DA703 | BBB | BB00 | 38 | 0.51 |
| 19 | 1jfi_E_DA703_DG704 | BBB | BB00 | 74 | 0.32 |
| 20 | 1jfi_E_DG704_DC705 | B12 | BB04 | 75 | 0.30 |
| 21 | 1jfi_E_DC705_DC706 | BBw | BB02 | 58 | 0.26 |
| 22 | 1jfi_E_DC706_DC707 | BBB | BB00 | 86 | 0.24 |
| 23 | 1jfi_E_DC707_DT708 | BBB | BB00 | 42 | 0.49 |
| 24 | 1jfi_E_DT708_DT709 | BBB | BB00 | 71 | 0.32 |
| 25 | 1jfi_E_DT709_DT710 | BBB | BB00 | 49 | 0.30 |
| 26 | 1jfi_E_DT710_DT711 | BBB | BB00 | 37 | 0.51 |
| 27 | 1jfi_E_DT711_DA712 | NAN | NANT | 0 | 0.73 |
| 28 | 1jfi_E_DA712_DT713 | BBB | BB00 | 26 | 0.42 |
| 29 | 1jfi_E_DT713_DA714 | BBB | BB00 | 46 | 0.35 |
| 30 | 1jfi_E_DA714_DG715 | NAN | NANT | 0 | 0.57 |
| 31 | 1jfi_E_DG715_DC716 | BBB | BB00 | 47 | 0.30 |
| 32 | 1jfi_E_DC716_DC717 | BBB | BB00 | 76 | 0.20 |
| 33 | 1jfi_E_DC717_DA718 | BBB | BB00 | 79 | 0.23 |
| 34 | 1jfi_E_DA718_DA719 | NAN | NANT | 0 | 0.65 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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