Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of the Ku heterodimer bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1jey_C_DG1_DT2 | BBB | BB00 | 34 | 0.45 |
| 02 | 1jey_C_DT2_DT3 | BBB | BB00 | 85 | 0.25 |
| 03 | 1jey_C_DT3_DT4 | B12 | BB04 | 59 | 0.27 |
| 04 | 1jey_C_DT4_DT5 | BBB | BB00 | 64 | 0.29 |
| 05 | 1jey_C_DT5_DT6 | B12 | BB04 | 73 | 0.21 |
| 06 | 1jey_C_DT6_DA7 | BB2 | BB07 | 65 | 0.25 |
| 07 | 1jey_C_DA7_DG8 | BBB | BB00 | 96 | 0.10 |
| 08 | 1jey_C_DG8_DT9 | BBw | BB02 | 35 | 0.35 |
| 09 | 1jey_C_DT9_DT10 | BBB | BB00 | 32 | 0.40 |
| 10 | 1jey_C_DT10_DT11 | B12 | BB04 | 47 | 0.36 |
| 11 | 1jey_C_DT11_DA12 | BB2 | BB07 | 44 | 0.24 |
| 12 | 1jey_C_DA12_DT13 | miB | BB10 | 72 | 0.27 |
| 13 | 1jey_C_DT13_DT14 | BBB | BB00 | 84 | 0.14 |
| 14 | 1jey_C_DT14_DG15 | NAN | NANT | 0 | 0.68 |
| 15 | 1jey_C_DG15_DG16 | BBB | BB00 | 69 | 0.33 |
| 16 | 1jey_C_DG16_DG17 | B12 | BB04 | 85 | 0.26 |
| 17 | 1jey_C_DG17_DC18 | BBB | BB00 | 88 | 0.18 |
| 18 | 1jey_D_DG4_DC5 | NAN | NANT | 0 | 0.63 |
| 19 | 1jey_D_DC5_DC6 | B12 | BB04 | 64 | 0.27 |
| 20 | 1jey_D_DC6_DC7 | B12 | BB04 | 54 | 0.23 |
| 21 | 1jey_D_DC7_DA8 | NAN | NANT | 0 | 1.25 |
| 22 | 1jey_D_DA8_DG9 | BBB | BB00 | 63 | 0.34 |
| 23 | 1jey_D_DG9_DC10 | B12 | BB04 | 71 | 0.23 |
| 24 | 1jey_D_DC10_DT11 | B12 | BB04 | 84 | 0.17 |
| 25 | 1jey_D_DT11_DT12 | NAN | NANT | 0 | 0.70 |
| 26 | 1jey_D_DT12_DT13 | NAN | NANT | 0 | 2.25 |
| 27 | 1jey_D_DT13_DC14 | NAN | NANT | 0 | 1.17 |
| 28 | 1jey_D_DC14_DC15 | NAN | NANT | 0 | 1.38 |
| 29 | 1jey_D_DC15_DC16 | NAN | NANT | 0 | 1.89 |
| 30 | 1jey_D_DC16_DA17 | NAN | NANT | 0 | 1.13 |
| 31 | 1jey_D_DA17_DG18 | BBB | BB00 | 79 | 0.27 |
| 32 | 1jey_D_DG18_DC19 | miB | BB10 | 70 | 0.27 |
| 33 | 1jey_D_DC19_DT20 | NAN | NANT | 0 | 0.64 |
| 34 | 1jey_D_DT20_DA21 | NAN | NANT | 0 | 1.12 |
| 35 | 1jey_D_DA21_DA22 | BBB | BB00 | 71 | 0.31 |
| 36 | 1jey_D_DA22_DT23 | BBB | BB00 | 70 | 0.29 |
| 37 | 1jey_D_DT23_DA24 | B12 | BB04 | 62 | 0.24 |
| 38 | 1jey_D_DA24_DA25 | B12 | BB04 | 84 | 0.18 |
| 39 | 1jey_D_DA25_DA26 | BBw | BB02 | 72 | 0.14 |
| 40 | 1jey_D_DA26_DC27 | BBB | BB00 | 68 | 0.31 |
| 41 | 1jey_D_DC27_DT28 | BBB | BB00 | 57 | 0.30 |
| 42 | 1jey_D_DT28_DA29 | BBB | BB00 | 90 | 0.14 |
| 43 | 1jey_D_DA29_DA30 | B12 | BB04 | 87 | 0.22 |
| 44 | 1jey_D_DA30_DA31 | B12 | BB04 | 87 | 0.13 |
| 45 | 1jey_D_DA31_DA32 | BBB | BB00 | 78 | 0.24 |
| 46 | 1jey_D_DA32_DA33 | B12 | BB04 | 86 | 0.21 |
| 47 | 1jey_D_DA33_DC34 | BBB | BB00 | 74 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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