Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1j8g_A_U1_G2 | OPN | OP08 | 21 | 0.27 |
| 02 | 1j8g_A_G2_G3 | A-B | AB05 | 79 | 0.25 |
| 03 | 1j8g_A_G3_G4 | B-A | BA01 | 5 | 0.38 |
| 04 | 1j8g_A_G4_G5 | AAA | AA00 | 78 | 0.18 |
| 05 | 1j8g_A_G5_U6 | ZZZ | ZZ01 | 65 | 0.21 |
| 06 | 1j8g_B_U11_G12 | OPN | OP08 | 26 | 0.28 |
| 07 | 1j8g_B_G12_G13 | A-B | AB05 | 85 | 0.23 |
| 08 | 1j8g_B_G13_G14 | B-A | BA01 | 5 | 0.39 |
| 09 | 1j8g_B_G14_G15 | AAA | AA00 | 87 | 0.16 |
| 10 | 1j8g_B_G15_U16 | A-B | AB05 | 67 | 0.17 |
| 11 | 1j8g_C_U21_G22 | OPN | OP08 | 11 | 0.28 |
| 12 | 1j8g_C_G22_G23 | A-B | AB05 | 79 | 0.24 |
| 13 | 1j8g_C_G23_G24 | NAN | NANT | 0 | 0.47 |
| 14 | 1j8g_C_G24_G25 | AAA | AA00 | 70 | 0.22 |
| 15 | 1j8g_C_G25_U26 | ZZZ | ZZ01 | 68 | 0.18 |
| 16 | 1j8g_D_U31_G32 | OPN | OP08 | 15 | 0.29 |
| 17 | 1j8g_D_G32_G33 | A-B | AB05 | 85 | 0.22 |
| 18 | 1j8g_D_G33_G34 | B-A | BA08 | 29 | 0.44 |
| 19 | 1j8g_D_G34_G35 | AAA | AA00 | 75 | 0.21 |
| 20 | 1j8g_D_G35_U36 | NAN | NANT | 0 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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