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Conformers: ABBIImiBZICOPNSYNN
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Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011j7t_A_G2_C3NANNANT00.32 AA10
021j7t_A_C3_G4AAAAA08560.28 AA08
031j7t_A_G4_U5AAwAA01610.42 AA01
041j7t_A_U5_C6AAAAA00190.59 AA00
051j7t_A_C6_A7AAAAA00650.24 AA00
061j7t_A_A7_C8AAAAA00810.18 AA00
071j7t_A_C8_A9AAAAA08730.16 AA08
081j7t_A_A9_C10AAAAA08780.23 AA08
091j7t_A_C10_C11AAAAA00730.24 AA00
101j7t_A_C11_G12AAAAA00900.17 AA00
111j7t_A_G12_G13AAAAA00870.17 AA00
121j7t_A_G13_U14AAAAA00790.23 AA00
131j7t_A_U14_G15AAAAA00960.18 AA00
141j7t_A_G15_A16NANNANT01.54 OP17
151j7t_A_A16_A17AAAAA04400.36 AA04
161j7t_A_A17_G18NANNANT00.69 OP11
171j7t_A_G18_U19AAAAA00620.30 AA00
181j7t_A_U19_C20AAAAA00770.17 AA00
191j7t_A_C20_G21AAAAA00570.13 AA00
201j7t_A_G21_C22AAAAA00580.25 AA00
211j7t_B_G24_C25AAAAA00440.29 AA00
221j7t_B_C25_G26AAAAA00160.26 AA00
231j7t_B_G26_U27AAwAA01190.46 AA01
241j7t_B_U27_C28AAwAA01330.41 AA01
251j7t_B_C28_A29AAAAA08800.24 AA08
261j7t_B_A29_C30AAAAA00790.23 AA00
271j7t_B_C30_A31AAAAA00890.15 AA00
281j7t_B_A31_C32AAAAA00920.14 AA00
291j7t_B_C32_C33AAAAA00950.16 AA00
301j7t_B_C33_G34AAAAA08790.19 AA08
311j7t_B_G34_G35AAAAA00760.22 AA00
321j7t_B_G35_U36AAAAA00890.11 AA00
331j7t_B_U36_G37AAAAA00910.16 AA00
341j7t_B_G37_A38NANNANT01.33 IC07
351j7t_B_A38_A39AAAAA09800.24 AA09
361j7t_B_A39_G40NANNANT00.80 OP11
371j7t_B_G40_U41AAAAA00350.38 AA00
381j7t_B_U41_C42AAwAA01880.32 AA01
391j7t_B_C42_G43AAAAA08720.29 AA08
401j7t_B_G43_C44AAAAA00850.17 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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