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Conformers: ABBIImiBZICOPNSYNN
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CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011j59_C_DG-5_DC-4NANNANT00.62 BB15
021j59_C_DC-4_DG-3NANNANT00.73 BB02
031j59_C_DG-3_DA-2B12BB04310.43 BB04
041j59_C_DA-2_DA-1BBBBB00470.35 BB00
051j59_C_DA-1_DA1BBBBB00830.29 BB00
061j59_C_DA1_DA2BBBBB01720.24 BB01
071j59_C_DA2_DG3BBBBB01770.14 BB01
081j59_C_DG3_DT4BBBBB00660.21 BB00
091j59_C_DT4_DG5BBBBB00380.52 BB00
101j59_C_DG5_DT6NANNANT00.42 BB00
111j59_C_DT6_DG7BBBBB00150.48 BB00
121j59_C_DG7_DA8BB2BB07570.35 BB07
131j59_C_DA8_DC9NANNANT00.86 AB02
141j59_D_DA10_DT11NANNANT00.33 BB16
151j59_D_DT11_DA12BBBBB00170.40 BB00
161j59_D_DA12_DT13BBBBB00150.37 BB00
171j59_D_DT13_DG14miBBB14180.37 BB14
181j59_D_DG14_DT15miBBB15550.35 BB15
191j59_D_DT15_DC16NANNANT00.55 BB02
201j59_D_DC16_DA17NANNANT00.78 AB03
211j59_D_DA17_DC18NANNANT00.46 BB01
221j59_D_DC18_DA19BBBBB00360.55 BB00
231j59_D_DA19_DC20NANNANT00.50 BB00
241j59_D_DC20_DT21NANNANT00.69 BB02
251j59_D_DT21_DT22NANNANT00.60 BB10
261j59_D_DT22_DT23BBBBB00540.35 BB00
271j59_D_DT23_DT24B-ABA01480.23 BA01
281j59_D_DT24_DC25A-BAB01430.47 AB01
291j59_D_DC25_DG26B12BB04560.39 BB04
301j59_E_DA15_DC14NANNANT00.40 BA13
311j59_E_DG16_DA15BBBBB00480.53 BB00
321j59_E_DT17_DG16NANNANT01.28 BB02
331j59_E_DG18_DT17NANNANT00.46 BB13
341j59_E_DT19_DG18BBBBB00220.47 BB00
351j59_E_DG20_DT19miBBB15660.30 BB15
361j59_E_DA21_DG20BBBBB00460.33 BB00
371j59_E_DA22_DA21BBwBB02600.23 BB02
381j59_E_DA23_DA22BBwBB16470.51 BB16
391j59_E_DA24_DA23NANNANT00.47 BB11
401j59_E_DG25_DA24NANNANT00.52 BB17
411j59_E_DC26_DG25NANNANT00.80 BB12
421j59_E_DG27_DC26NANNANT00.50 BA17
431j59_F_DC-3_DG-4NANNANT00.30 BB07
441j59_F_DT-2_DC-3BBBBB00490.42 BB00
451j59_F_DT-1_DT-2BBBBB00760.24 BB00
461j59_F_DT1_DT-1BBBBB00200.29 BB00
471j59_F_DT2_DT1B-ABA05720.35 BA05
481j59_F_DC3_DT2BBBBB00700.32 BB00
491j59_F_DA4_DC3BBBBB00240.25 BB00
501j59_F_DC5_DA4NANNANT00.58 BA17
511j59_F_DA6_DC5B12BB0490.42 BB04
521j59_F_DC7_DA6NANNANT00.39 BB04
531j59_F_DT8_DC7NANNANT00.57 BB00
541j59_F_DG9_DT8miBBB15520.23 BB15
551j59_F_DT10_DG9BBBBB00140.45 BB00
561j59_F_DA11_DT10BBBBB00560.27 BB00
571j59_F_DT12_DA11NANNANT00.50 BB14
581j59_F_DA13_DT12NANNANT00.51 BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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