Conformers:
ABBIImiBZICOPNSYNN
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3D Solution NMR Structure of the M9I Mutant of the HMG-Box Domain of the Human Male Sex Determining Factor SRY Complexed to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1j47_B_DC101_DC102 | BBB | BB00 | 91 | 0.16 |
| 02 | 1j47_B_DC102_DT103 | BBB | BB00 | 92 | 0.17 |
| 03 | 1j47_B_DT103_DG104 | BBB | BB00 | 87 | 0.19 |
| 04 | 1j47_B_DG104_DC105 | BBB | BB00 | 87 | 0.25 |
| 05 | 1j47_B_DC105_DA106 | BBB | BB00 | 86 | 0.20 |
| 06 | 1j47_B_DA106_DC107 | BBB | BB00 | 90 | 0.20 |
| 07 | 1j47_B_DC107_DA108 | B-A | BA01 | 12 | 0.37 |
| 08 | 1j47_B_DA108_DA109 | A-B | AB01 | 50 | 0.27 |
| 09 | 1j47_B_DA109_DA110 | BBB | BB00 | 67 | 0.42 |
| 10 | 1j47_B_DA110_DC111 | BBB | BB00 | 63 | 0.37 |
| 11 | 1j47_B_DC111_DA112 | BBB | BB00 | 72 | 0.46 |
| 12 | 1j47_B_DA112_DC113 | BBB | BB00 | 90 | 0.15 |
| 13 | 1j47_B_DC113_DC114 | BBB | BB00 | 78 | 0.26 |
| 14 | 1j47_C_DG115_DG116 | BBB | BB00 | 93 | 0.19 |
| 15 | 1j47_C_DG116_DT117 | BBB | BB00 | 90 | 0.15 |
| 16 | 1j47_C_DT117_DG118 | BBB | BB00 | 88 | 0.32 |
| 17 | 1j47_C_DG118_DT119 | B-A | BA01 | 37 | 0.26 |
| 18 | 1j47_C_DT119_DT120 | AAA | AA00 | 79 | 0.34 |
| 19 | 1j47_C_DT120_DT121 | A-B | AB01 | 64 | 0.18 |
| 20 | 1j47_C_DT121_DG122 | BBB | BB00 | 90 | 0.23 |
| 21 | 1j47_C_DG122_DT123 | BBB | BB00 | 87 | 0.18 |
| 22 | 1j47_C_DT123_DG124 | BBB | BB00 | 89 | 0.18 |
| 23 | 1j47_C_DG124_DC125 | BBB | BB00 | 91 | 0.20 |
| 24 | 1j47_C_DC125_DA126 | BBB | BB00 | 93 | 0.18 |
| 25 | 1j47_C_DA126_DG127 | BBB | BB00 | 95 | 0.15 |
| 26 | 1j47_C_DG127_DG128 | BBB | BB00 | 97 | 0.14 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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