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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011j3e_B_DA201_DA202BBBBB00740.23 BB00
021j3e_B_DA202_DG203BBBBB00860.20 BB00
031j3e_B_DG203_DG204BBBBB00840.18 BB00
041j3e_B_DG204_6MA205BB2BB07700.46 BB07
051j3e_B_6MA205_DT206BBBBB00860.18 BB00
061j3e_B_DT206_DC207BBBBB00830.20 BB00
071j3e_B_DC207_DC208B12BB04770.20 BB04
081j3e_B_DC208_DA209BBBBB00660.24 BB00
091j3e_B_DA209_DA210BBBBB00820.24 BB00
101j3e_C_DT211_DT212NANNANT00.74 BB07
111j3e_C_DT212_DG213BBBBB00800.22 BB00
121j3e_C_DG213_DG214BBBBB00730.33 BB00
131j3e_C_DG214_DA215BBBBB00860.21 BB00
141j3e_C_DA215_DG216NANNANT00.64 BB08
151j3e_C_DG216_DC217BBBBB00860.18 BB00
161j3e_C_DC217_DC218B12BB04900.20 BB04
171j3e_C_DC218_DT219B12BB04770.21 BB04
181j3e_C_DT219_DT220BBwBB03780.25 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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