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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of DnaA domainIV complexed with DnaAbox DNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011j1v_B_DT101_DG102BBwBB16690.50 BB16
021j1v_B_DG102_DT103BBBBB00750.26 BB00
031j1v_B_DT103_DT104BBBBB00720.20 BB00
041j1v_B_DT104_DA105BB2BB07930.17 BB07
051j1v_B_DA105_DT106BBBBB00390.28 BB00
061j1v_B_DT106_DC107BBBBB00590.24 BB00
071j1v_B_DC107_DC108BBBBB00890.16 BB00
081j1v_B_DC108_DA109BBBBB00920.14 BB00
091j1v_B_DA109_DC110BBwBB02670.20 BB02
101j1v_B_DC110_DA111BBBBB00660.24 BB00
111j1v_B_DA111_DG112B12BB04890.27 BB04
121j1v_B_DG112_DG113BBwBB03580.39 BB03
131j1v_C_DC201_DC202BBBBB01320.35 BB01
141j1v_C_DC202_DT203BBBBB00540.29 BB00
151j1v_C_DT203_DG204BBwBB02810.15 BB02
161j1v_C_DG204_DT205BBBBB00740.26 BB00
171j1v_C_DT205_DG206BBBBB00960.13 BB00
181j1v_C_DG206_DG207BBBBB00880.18 BB00
191j1v_C_DG207_DA208BBwBB02770.32 BB02
201j1v_C_DA208_DT209BBBBB00640.27 BB00
211j1v_C_DT209_DA210BB2BB07560.26 BB07
221j1v_C_DA210_DA211BBwBB02150.30 BB02
231j1v_C_DA211_DC212NANNANT00.36 BA10
241j1v_C_DC212_DA213BBwBB16370.57 BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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